Variant report

Variant	rs2169581
Chromosome Location	chr15:43226766-43226767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11070385	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11631404	0.81[EUR][1000 genomes]
rs1197533	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12050604	0.81[EUR][1000 genomes]
rs1206698	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12437637	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12440652	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12904179	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12913213	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12913586	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13329073	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1381855	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2126603	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2277532	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2682074	0.97[EUR][1000 genomes]
rs28407836	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28646262	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28715020	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28805017	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28890597	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4923952	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4923956	0.81[EUR][1000 genomes]
rs4924702	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56114844	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62020697	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62020699	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62020706	0.82[EUR][1000 genomes]
rs6493067	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6493068	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6493069	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7165888	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7169603	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7173097	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7176915	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7178752	0.84[AMR][1000 genomes]
rs7496079	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8025479	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8028731	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8028822	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8036096	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9806175	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1036512	chr15:43164906-43274531	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569239	chr15:43201109-43392075	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
12	nsv1039587	chr15:43204351-43378274	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv974565	chr15:43225638-43234039	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43222400-43236600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr15:43223600-43227400	Weak transcription	HepG2	liver
3	chr15:43223600-43238400	Weak transcription	Ovary	ovary
4	chr15:43225400-43226800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr15:43225600-43227400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:43225800-43227000	Weak transcription	NHEK	skin
7	chr15:43225800-43236000	Weak transcription	HUVEC	blood vessel
8	chr15:43225800-43247600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:43226000-43242200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:43226400-43227600	Weak transcription	HMEC	breast
11	chr15:43226400-43228200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:43226400-43228200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:43226400-43235400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:43226600-43235400	Weak transcription	Primary hematopoietic stem cells	blood

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