Variant report

Variant	rs6493069
Chromosome Location	chr15:43186765-43186766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11070385	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11631404	0.84[EUR][1000 genomes]
rs1197533	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12050604	0.84[EUR][1000 genomes]
rs1206698	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437637	0.84[EUR][1000 genomes]
rs12440652	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12904179	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12913213	0.86[EUR][1000 genomes]
rs12913586	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13329073	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1381855	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2126603	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2169581	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2277532	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2682074	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28407836	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28646262	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28715020	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28805017	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28890597	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4923952	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4923956	0.85[EUR][1000 genomes]
rs4924702	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56114844	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58745709	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62020697	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62020699	0.87[AMR][1000 genomes]
rs62020706	0.86[EUR][1000 genomes]
rs6493067	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6493068	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7165888	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7167802	0.85[ASN][1000 genomes]
rs7168141	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7169603	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7173097	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7173782	0.83[EUR][1000 genomes]
rs7176915	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7178752	0.82[AMR][1000 genomes]
rs7182753	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7496079	0.84[EUR][1000 genomes]
rs8025479	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8028731	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8028822	0.84[AMR][1000 genomes]
rs8036096	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9806175	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv3490431	chr15:43148709-43190630	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3490432	chr15:43148709-43190630	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1036512	chr15:43164906-43274531	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv3408090	chr15:43172709-43207571	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3366604	chr15:43172709-43210677	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3408604	chr15:43175709-43207571	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43132000-43186800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr15:43182800-43186800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:43182800-43207000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:43183200-43195000	Weak transcription	Right Atrium	heart
5	chr15:43183200-43211600	Weak transcription	Left Ventricle	heart
6	chr15:43183600-43201400	Weak transcription	Lung	lung
7	chr15:43183800-43207200	Weak transcription	Ovary	ovary
8	chr15:43184200-43203400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:43184200-43207400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:43185400-43187000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr15:43185400-43187000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:43185400-43187000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:43185400-43187400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:43185600-43207000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:43185800-43186800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr15:43186000-43187000	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr15:43186400-43187200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:43186600-43187200	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr15:43186600-43187400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr15:43186600-43187400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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