Variant report

Variant	rs2169674
Chromosome Location	chr10:54971480-54971481
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10740541	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10740542	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10762946	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10824946	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1903910	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1903931	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1903932	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1903945	1.00[ASN][1000 genomes]
rs2384152	1.00[ASN][1000 genomes]
rs2384153	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891439	1.00[ASN][1000 genomes]
rs2891447	1.00[ASN][1000 genomes]
rs4935061	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935403	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935404	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935406	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901029	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902466	1.00[ASN][1000 genomes]
rs7918638	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831878	chr10:54902106-55085586	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1054455	chr10:54932474-55001559	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv895408	chr10:54938398-54999514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54966400-54981600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:54970400-54974600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:54971400-54971600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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