Variant report

Variant	rs2169866
Chromosome Location	chr3:105686045-105686046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11708961	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11712845	0.95[ASN][1000 genomes]
rs11719813	0.98[ASN][1000 genomes]
rs16851842	1.00[CEU][hapmap]
rs16851846	0.98[ASN][1000 genomes]
rs2127092	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57868319	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6781481	0.88[ASN][1000 genomes]
rs73193950	0.92[ASN][1000 genomes]
rs73193952	0.92[ASN][1000 genomes]
rs73193960	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105677600-105689400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:105683600-105686800	Enhancers	Osteobl	bone
3	chr3:105683800-105686600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:105683800-105686800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:105683800-105686800	Enhancers	NHDF-Ad	bronchial
6	chr3:105684000-105686600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:105684400-105686800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:105684800-105689000	Weak transcription	Adipose Nuclei	Adipose
9	chr3:105685000-105689000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:105685400-105686200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:105685600-105686200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:105685800-105686200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr3:105685800-105686400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:105685800-105686400	Enhancers	Fetal Kidney	kidney
15	chr3:105685800-105686600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr3:105685800-105686600	Enhancers	A549	lung
17	chr3:105685800-105686800	Enhancers	Hela-S3	cervix
18	chr3:105686000-105686400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:105686000-105686400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:105686000-105686400	Enhancers	Fetal Lung	lung
21	chr3:105686000-105686400	Enhancers	Fetal Stomach	stomach
22	chr3:105686000-105686400	Enhancers	HMEC	breast
23	chr3:105686000-105686400	Enhancers	HSMMtube	muscle
24	chr3:105686000-105686800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:105686000-105686800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:105686000-105686800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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