Variant report

Variant	rs6781481
Chromosome Location	chr3:105693298-105693299
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11708961	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11712845	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11719813	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13062596	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16851846	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2127092	0.88[ASN][1000 genomes]
rs2169866	0.88[ASN][1000 genomes]
rs2249685	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2249688	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2249697	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2455880	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57868319	0.90[ASN][1000 genomes]
rs73193950	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73193952	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73193960	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv999883	chr3:105687634-106007792	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3352561	chr3:105690962-105693360	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105691600-105697400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:105691600-105715600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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