Variant report

Variant	rs217034
Chromosome Location	chr7:141006004-141006005
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2040928	0.93[EUR][1000 genomes]
rs2057915	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6944144	0.87[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7797098	0.82[ASN][1000 genomes]
rs7800882	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs981448	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs981449	0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs217034	KIAA1549	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140994400-141018000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:141004600-141014200	Weak transcription	Right Atrium	heart
3	chr7:141005000-141013000	Weak transcription	Right Ventricle	heart
4	chr7:141005800-141006200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:141006000-141006200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:141006000-141006200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:141006000-141006200	ZNF genes & repeats	Left Ventricle	heart
8	chr7:141006000-141006600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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