Variant report

Variant	rs981449
Chromosome Location	chr7:141012727-141012728
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2040928	0.86[EUR][1000 genomes]
rs2057915	0.88[EUR][1000 genomes]
rs217034	0.88[EUR][1000 genomes]
rs6944144	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs7800882	0.88[EUR][1000 genomes]
rs981448	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831160	chr7:141009011-141188046	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs981449	KIAA1549	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140994400-141018000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:141004600-141014200	Weak transcription	Right Atrium	heart
3	chr7:141005000-141013000	Weak transcription	Right Ventricle	heart
4	chr7:141012000-141013000	Weak transcription	Left Ventricle	heart
5	chr7:141012000-141013400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr7:141012400-141012800	Enhancers	Brain Germinal Matrix	brain
7	chr7:141012400-141012800	Enhancers	Psoas Muscle	Psoas
8	chr7:141012400-141013400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr7:141012400-141013800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr7:141012600-141012800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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