Variant report

Variant	rs2170401
Chromosome Location	chr2:183110639-183110640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1481629	1.00[YRI][hapmap]
rs167284	1.00[YRI][hapmap]
rs2128044	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2568665	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2568666	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2568683	1.00[YRI][hapmap]
rs2568684	1.00[YRI][hapmap]
rs2623420	1.00[YRI][hapmap]
rs73046044	1.00[AFR][1000 genomes]
rs73046050	0.87[AFR][1000 genomes]
rs73046062	1.00[AFR][1000 genomes]
rs833130	1.00[YRI][hapmap]
rs833131	1.00[YRI][hapmap]
rs833139	1.00[YRI][hapmap]
rs964756	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183104600-183112800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:183106400-183138400	Weak transcription	Aorta	Aorta
3	chr2:183109400-183111000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:183110000-183112200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:183110400-183111000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:183110600-183110800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:183110600-183111000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:183110600-183111000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:183110600-183111600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:183110600-183111600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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