Variant report

Variant	rs964756
Chromosome Location	chr2:183114116-183114117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1481629	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs167284	1.00[YRI][hapmap]
rs1842639	0.87[AFR][1000 genomes]
rs2128044	1.00[YRI][hapmap]
rs2170401	1.00[YRI][hapmap]
rs2568665	1.00[YRI][hapmap]
rs2568666	1.00[YRI][hapmap]
rs2568683	1.00[YRI][hapmap]
rs2568684	1.00[YRI][hapmap]
rs2623417	0.87[AFR][1000 genomes]
rs2623420	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs73047939	0.87[AFR][1000 genomes]
rs833130	1.00[YRI][hapmap]
rs833131	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs833136	0.89[AFR][1000 genomes]
rs833139	1.00[YRI][hapmap]
rs833157	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183106400-183138400	Weak transcription	Aorta	Aorta
2	chr2:183111600-183117000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:183112200-183114200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:183113200-183115400	Weak transcription	Right Atrium	heart
5	chr2:183113600-183138800	Weak transcription	Fetal Stomach	stomach
6	chr2:183113800-183124200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:183114000-183114400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links