Variant report

Variant	rs2170851
Chromosome Location	chr2:179683863-179683864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17355446	1.00[AFR][1000 genomes]
rs4894035	1.00[AFR][1000 genomes]
rs6433734	1.00[AFR][1000 genomes]
rs72648950	1.00[AFR][1000 genomes]
rs9288021	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
3	chr2:179666800-179684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:179674400-179691000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:179676400-179684400	Weak transcription	Psoas Muscle	Psoas
6	chr2:179681400-179684800	Weak transcription	Primary T cells from cord blood	blood
7	chr2:179682200-179684400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr2:179682600-179684400	Weak transcription	GM12878-XiMat	blood
9	chr2:179683200-179689000	Weak transcription	Left Ventricle	heart
10	chr2:179683600-179685000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:179683600-179685000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:179683600-179685000	Enhancers	HSMM	muscle
13	chr2:179683600-179685200	Enhancers	HSMMtube	muscle
14	chr2:179683600-179685800	Enhancers	Fetal Heart	heart
15	chr2:179683800-179684000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr2:179683800-179684200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr2:179683800-179684200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr2:179683800-179685000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr2:179683800-179685200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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