Variant report

Variant	rs6433734
Chromosome Location	chr2:179678366-179678367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17355446	1.00[AFR][1000 genomes]
rs2170851	1.00[AFR][1000 genomes]
rs4894035	1.00[AFR][1000 genomes]
rs72648950	1.00[AFR][1000 genomes]
rs9288021	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
3	chr2:179666800-179684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:179669600-179680800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr2:179673000-179682600	Weak transcription	Left Ventricle	heart
6	chr2:179673800-179683600	Weak transcription	HSMMtube	muscle
7	chr2:179674400-179691000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:179676000-179679200	Weak transcription	Fetal Heart	heart
9	chr2:179676400-179680800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr2:179676400-179684400	Weak transcription	Psoas Muscle	Psoas
11	chr2:179676800-179678600	Weak transcription	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links