Variant report

Variant	rs2171542
Chromosome Location	chr3:156429651-156429652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156428100..156430443-chr3:156543237..156545884,2	K562	blood:

Variant related genes	Relation type
ENSG00000197980	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11709829	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11917436	0.81[ASN][1000 genomes]
rs13095806	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13322900	0.82[ASN][1000 genomes]
rs1469536	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1560414	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34277251	0.82[ASN][1000 genomes]
rs8792	0.81[ASN][1000 genomes]
rs9868587	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156394000-156436000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:156395600-156438600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:156396600-156441000	Weak transcription	Lung	lung
4	chr3:156409000-156429800	Weak transcription	Gastric	stomach
5	chr3:156416000-156437000	Weak transcription	Pancreas	Pancrea
6	chr3:156416000-156443000	Weak transcription	Aorta	Aorta
7	chr3:156417000-156430400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:156419800-156433800	Weak transcription	Esophagus	oesophagus
9	chr3:156420600-156429800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:156422800-156429800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:156422800-156430400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:156422800-156431400	Weak transcription	Fetal Kidney	kidney
13	chr3:156422800-156436400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:156422800-156436400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:156422800-156436400	Weak transcription	Placenta	Placenta
16	chr3:156422800-156437600	Weak transcription	Thymus	Thymus
17	chr3:156422800-156438600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:156422800-156442800	Weak transcription	Psoas Muscle	Psoas
19	chr3:156423000-156430000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr3:156423000-156430000	Weak transcription	Fetal Stomach	stomach
21	chr3:156423000-156436000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:156423000-156443200	Weak transcription	Small Intestine	intestine
23	chr3:156423000-156445800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr3:156423600-156431600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr3:156424000-156440800	Weak transcription	NHLF	lung
26	chr3:156424200-156430000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr3:156424200-156430000	Weak transcription	Brain Angular Gyrus	brain
28	chr3:156424200-156432600	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:156424200-156436600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:156424200-156443000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr3:156424200-156445800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr3:156424400-156430200	Weak transcription	Ovary	ovary
33	chr3:156424400-156430800	Weak transcription	Brain Anterior Caudate	brain
34	chr3:156424400-156433400	Weak transcription	Primary T cells from cord blood	blood
35	chr3:156424400-156434600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr3:156424400-156435000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:156424400-156436600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:156424400-156436600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr3:156424400-156438400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:156424400-156438400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr3:156424400-156438600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:156424400-156438600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:156424400-156438600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr3:156424800-156438400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr3:156425400-156429800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr3:156425400-156434800	Weak transcription	Adipose Nuclei	Adipose
47	chr3:156425600-156430200	Weak transcription	Fetal Muscle Leg	muscle
48	chr3:156425600-156430600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr3:156425600-156432800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr3:156425600-156435000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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