Variant report

Variant	rs13322900
Chromosome Location	chr3:156450018-156450019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156449917..156452057-chr3:156455354..156457337,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11709829	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11917436	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13061457	0.85[ASN][1000 genomes]
rs13068223	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13095806	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1469536	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1560414	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2171542	0.82[ASN][1000 genomes]
rs34111024	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34277251	0.81[ASN][1000 genomes]
rs344027	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs344035	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36126086	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8792	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9868587	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156439600-156451800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:156440400-156450200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:156445600-156459600	Weak transcription	Brain Substantia Nigra	brain
4	chr3:156446400-156454000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:156446400-156464600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:156446400-156467000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:156446600-156450400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:156446600-156452000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:156446800-156452000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:156446800-156452400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:156447800-156450800	Weak transcription	Left Ventricle	heart
12	chr3:156447800-156450800	Enhancers	HepG2	liver
13	chr3:156447800-156453000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:156447800-156457400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:156447800-156457400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:156447800-156464200	Weak transcription	HSMM	muscle
17	chr3:156447800-156464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:156447800-156465000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:156447800-156467000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:156448200-156462800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:156448200-156464200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:156448400-156450600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:156448400-156464600	Weak transcription	NHEK	skin
24	chr3:156449000-156451000	Enhancers	HSMMtube	muscle
25	chr3:156449400-156450200	Enhancers	Fetal Intestine Large	intestine
26	chr3:156449400-156450200	Enhancers	Fetal Intestine Small	intestine
27	chr3:156449400-156450400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:156449400-156450800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:156449800-156450600	Enhancers	Osteobl	bone
30	chr3:156449800-156450800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:156449800-156451000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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