Variant report

Variant	rs34111024
Chromosome Location	chr3:156466736-156466737
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-3	chr3:156465135-156468203	ENSG00000240875
2	lnc-SSR3-3	chr3:156464967-156468203	NONHSAT092863
3	lnc-SSR3-3	chr3:156465132-156468203	NR_038387

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11709829	0.89[ASN][1000 genomes]
rs11917436	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12107178	0.80[ASN][1000 genomes]
rs13061457	0.81[ASN][1000 genomes]
rs13068223	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13095806	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13322900	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1469536	0.88[ASN][1000 genomes]
rs1560414	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344027	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs344035	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36126086	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4098	0.80[ASN][1000 genomes]
rs8792	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9868587	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156446400-156467000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:156447800-156467000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:156460000-156468400	Weak transcription	Pancreas	Pancrea
4	chr3:156462200-156467000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:156464600-156468000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:156464800-156466800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:156464800-156467200	Weak transcription	Osteobl	bone
8	chr3:156465400-156467200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:156465600-156467200	Weak transcription	NHDF-Ad	bronchial
10	chr3:156465600-156467600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:156465800-156466800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:156465800-156467800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:156466200-156467000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:156466200-156467800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:156466200-156467800	Enhancers	HSMMtube	muscle
16	chr3:156466200-156468200	Enhancers	HSMM	muscle
17	chr3:156466200-156470200	Enhancers	Fetal Muscle Leg	muscle
18	chr3:156466400-156467000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:156466400-156467000	Weak transcription	HMEC	breast
20	chr3:156466400-156467800	Weak transcription	NHEK	skin
21	chr3:156466600-156467200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:156466600-156467600	Enhancers	Right Atrium	heart
23	chr3:156466600-156468000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:156466600-156469600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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