Variant report

Variant	rs2171729
Chromosome Location	chr10:16388691-16388692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10508510	1.00[EUR][1000 genomes]
rs10508511	1.00[EUR][1000 genomes]
rs11813598	1.00[EUR][1000 genomes]
rs11816194	1.00[EUR][1000 genomes]
rs11816988	1.00[EUR][1000 genomes]
rs12247544	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17138404	1.00[EUR][1000 genomes]
rs17138422	1.00[EUR][1000 genomes]
rs17138433	1.00[EUR][1000 genomes]
rs17138465	1.00[EUR][1000 genomes]
rs17156965	1.00[EUR][1000 genomes]
rs55778558	1.00[EUR][1000 genomes]
rs55989750	1.00[EUR][1000 genomes]
rs56007762	1.00[EUR][1000 genomes]
rs57870435	1.00[EUR][1000 genomes]
rs57908337	1.00[EUR][1000 genomes]
rs58610752	1.00[EUR][1000 genomes]
rs58740875	1.00[EUR][1000 genomes]
rs60128616	1.00[EUR][1000 genomes]
rs60131830	1.00[EUR][1000 genomes]
rs60198603	1.00[EUR][1000 genomes]
rs73589703	1.00[EUR][1000 genomes]
rs73589747	1.00[EUR][1000 genomes]
rs73589764	1.00[EUR][1000 genomes]
rs73589767	1.00[EUR][1000 genomes]
rs73589771	1.00[EUR][1000 genomes]
rs73589783	1.00[EUR][1000 genomes]
rs73589788	1.00[EUR][1000 genomes]
rs73591604	1.00[EUR][1000 genomes]
rs73591606	1.00[EUR][1000 genomes]
rs73591612	1.00[EUR][1000 genomes]
rs73591613	1.00[EUR][1000 genomes]
rs73591628	1.00[EUR][1000 genomes]
rs73591631	1.00[EUR][1000 genomes]
rs73591646	1.00[EUR][1000 genomes]
rs73591680	1.00[EUR][1000 genomes]
rs73591684	1.00[EUR][1000 genomes]
rs73591687	1.00[EUR][1000 genomes]
rs73600965	1.00[EUR][1000 genomes]
rs73606976	1.00[EUR][1000 genomes]
rs73606983	1.00[EUR][1000 genomes]
rs73606989	1.00[EUR][1000 genomes]
rs73606991	1.00[EUR][1000 genomes]
rs73606993	1.00[EUR][1000 genomes]
rs73606994	1.00[EUR][1000 genomes]
rs7901419	1.00[EUR][1000 genomes]
rs7915627	1.00[EUR][1000 genomes]
rs7922370	1.00[EUR][1000 genomes]
rs7922899	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530146	chr10:15722937-16522747	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv870420	chr10:16225427-16541252	Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv894904	chr10:16233175-16477106	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831796	chr10:16240111-16393044	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1051284	chr10:16321532-16392126	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv521864	chr10:16386748-16389315	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16371800-16402200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:16388600-16390600	Weak transcription	H1 Cell Line	embryonic stem cell

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