Variant report

Variant	rs60198603
Chromosome Location	chr10:16420464-16420465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10508510	1.00[EUR][1000 genomes]
rs10508511	1.00[EUR][1000 genomes]
rs11813598	1.00[EUR][1000 genomes]
rs11816988	1.00[EUR][1000 genomes]
rs12247544	1.00[EUR][1000 genomes]
rs17138404	1.00[EUR][1000 genomes]
rs17138422	1.00[EUR][1000 genomes]
rs17138433	1.00[EUR][1000 genomes]
rs17138465	1.00[EUR][1000 genomes]
rs17156965	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2171729	1.00[EUR][1000 genomes]
rs55778558	1.00[EUR][1000 genomes]
rs55989750	1.00[EUR][1000 genomes]
rs56007762	1.00[EUR][1000 genomes]
rs57908337	1.00[EUR][1000 genomes]
rs58610752	1.00[EUR][1000 genomes]
rs58740875	1.00[EUR][1000 genomes]
rs60128616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60131830	1.00[EUR][1000 genomes]
rs73589703	1.00[EUR][1000 genomes]
rs73589747	1.00[EUR][1000 genomes]
rs73589764	1.00[EUR][1000 genomes]
rs73589767	1.00[EUR][1000 genomes]
rs73589771	1.00[EUR][1000 genomes]
rs73589783	1.00[EUR][1000 genomes]
rs73589788	1.00[EUR][1000 genomes]
rs73591604	1.00[EUR][1000 genomes]
rs73591606	1.00[EUR][1000 genomes]
rs73591612	1.00[EUR][1000 genomes]
rs73591613	1.00[EUR][1000 genomes]
rs73591628	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73591631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73591646	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73591680	1.00[EUR][1000 genomes]
rs73591684	1.00[EUR][1000 genomes]
rs73591687	1.00[EUR][1000 genomes]
rs73600965	1.00[EUR][1000 genomes]
rs73606976	1.00[EUR][1000 genomes]
rs73606983	1.00[EUR][1000 genomes]
rs73606989	1.00[EUR][1000 genomes]
rs73606991	1.00[EUR][1000 genomes]
rs73606993	1.00[EUR][1000 genomes]
rs73606994	1.00[EUR][1000 genomes]
rs74125025	1.00[ASN][1000 genomes]
rs7901419	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530146	chr10:15722937-16522747	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv870420	chr10:16225427-16541252	Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv894904	chr10:16233175-16477106	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv894905	chr10:16410436-16483081	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16403400-16428600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:16409800-16428800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:16419600-16422000	Weak transcription	A549	lung
4	chr10:16420400-16420800	Weak transcription	Placenta	Placenta

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