Variant report

Variant	rs2173006
Chromosome Location	chr19:18265778-18265779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:18262556..18266763-chr19:18301801..18307197,7	K562	blood:
2	chr19:18111522..18113675-chr19:18263601..18266020,2	MCF-7	breast:
3	chr19:18260692..18269532-chr19:18383927..18395911,19	K562	blood:
4	chr19:18263953..18266175-chr19:18334676..18337393,3	K562	blood:
5	chr19:18260584..18267400-chr19:18276077..18285960,14	MCF-7	breast:
6	chr19:18264048..18266866-chr19:18276838..18280987,4	K562	blood:
7	chr19:18220648..18224657-chr19:18263294..18266426,4	MCF-7	breast:
8	chr19:18264824..18267615-chr19:18313161..18315862,2	MCF-7	breast:
9	chr19:17970168..17972112-chr19:18263471..18265985,2	K562	blood:
10	chr19:18265635..18269832-chr19:18313306..18316630,4	K562	blood:
11	chr19:18263401..18266218-chr19:18302169..18305024,2	MCF-7	breast:
12	chr19:18263876..18266605-chr19:18389709..18392510,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000105650	Chromatin interaction
ENSG00000099308	Chromatin interaction
ENSG00000130522	Chromatin interaction
ENSG00000105647	Chromatin interaction
ENSG00000267959	Chromatin interaction
ENSG00000130518	Chromatin interaction
ENSG00000254858	Chromatin interaction
ENSG00000105640	Chromatin interaction
ENSG00000216490	Chromatin interaction
ENSG00000268650	Chromatin interaction
ENSG00000105649	Chromatin interaction
ENSG00000105643	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12052085	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs273496	0.82[EUR][1000 genomes]
rs273512	0.83[EUR][1000 genomes]
rs3730179	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3746187	0.82[ASN][1000 genomes]
rs55989116	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62123609	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62123615	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62123617	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055932	chr19:17923918-18369944	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv543923	chr19:17923918-18369944	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
3	nsv532614	chr19:18033043-18573963	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	204 gene(s)	inside rSNPs	diseases
4	esv1837595	chr19:18085428-18393682	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
5	nsv833773	chr19:18152971-18302988	Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv911241	chr19:18193191-18304700	Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv911242	chr19:18201757-18304700	Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv911243	chr19:18206681-18283501	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv911244	chr19:18206681-18304700	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv911245	chr19:18206681-18338101	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
11	nsv833774	chr19:18213761-18295329	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
12	nsv833775	chr19:18213761-18390074	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
13	nsv911246	chr19:18224729-18283501	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
14	nsv911247	chr19:18224729-18288069	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv911248	chr19:18224729-18338101	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
16	nsv911249	chr19:18224729-18375846	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
17	nsv911250	chr19:18224729-18376522	Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
18	nsv911251	chr19:18224729-18422364	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
19	nsv2429	chr19:18234179-18279381	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
20	nsv911252	chr19:18234588-18338101	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
21	nsv911253	chr19:18240127-18418044	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
22	nsv916325	chr19:18244780-18534927	Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
23	nsv911254	chr19:18248146-18310678	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
24	nsv911255	chr19:18254876-18282586	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
25	nsv911256	chr19:18255359-18338101	Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
26	nsv911257	chr19:18258598-18282586	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
27	nsv911258	chr19:18262371-18282586	Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
28	nsv911259	chr19:18264940-18283501	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:18264800-18265800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr19:18265000-18265800	Flanking Active TSS	Fetal Intestine Large	intestine
3	chr19:18265000-18268800	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr19:18265000-18268800	Enhancers	Stomach Mucosa	stomach
5	chr19:18265000-18284200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr19:18265200-18265800	Enhancers	Left Ventricle	heart
7	chr19:18265200-18265800	Enhancers	Pancreas	Pancrea
8	chr19:18265200-18266400	Weak transcription	Aorta	Aorta
9	chr19:18265200-18266400	Weak transcription	Thymus	Thymus
10	chr19:18265200-18269600	Enhancers	Fetal Brain Male	brain
11	chr19:18265400-18265800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr19:18265400-18265800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr19:18265400-18265800	Enhancers	Right Ventricle	heart
14	chr19:18265400-18266200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr19:18265400-18266200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr19:18265400-18266200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr19:18265400-18266200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr19:18265400-18266200	Enhancers	Placenta	Placenta
19	chr19:18265400-18266600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr19:18265400-18267000	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr19:18265400-18267200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr19:18265400-18267200	Enhancers	Fetal Heart	heart
23	chr19:18265400-18267200	Weak transcription	Psoas Muscle	Psoas
24	chr19:18265400-18267200	Weak transcription	Right Atrium	heart
25	chr19:18265400-18267400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr19:18265400-18267400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr19:18265400-18267400	Weak transcription	HSMMtube	muscle
28	chr19:18265400-18267400	Weak transcription	HUVEC	blood vessel
29	chr19:18265400-18267800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr19:18265400-18267800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr19:18265400-18268600	Enhancers	Liver	Liver
32	chr19:18265400-18268600	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr19:18265400-18271200	Weak transcription	Primary B cells from cord blood	blood
34	chr19:18265400-18271200	Weak transcription	Small Intestine	intestine
35	chr19:18265400-18271400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr19:18265400-18271600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr19:18265400-18276600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr19:18265600-18265800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr19:18265600-18265800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr19:18265600-18265800	Active TSS	Fetal Brain Female	brain
41	chr19:18265600-18265800	Enhancers	Fetal Muscle Trunk	muscle
42	chr19:18265600-18265800	Enhancers	HepG2	liver
43	chr19:18265600-18266000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr19:18265600-18266000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr19:18265600-18266000	Enhancers	Brain Germinal Matrix	brain
46	chr19:18265600-18266000	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr19:18265600-18266000	Enhancers	K562	blood
48	chr19:18265600-18266200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr19:18265600-18266200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr19:18265600-18266200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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