Variant report

Variant	rs2173520
Chromosome Location	chr10:55156862-55156863
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10508995	0.84[EUR][1000 genomes]
rs12411918	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12412145	0.84[EUR][1000 genomes]
rs12414354	0.94[ASN][1000 genomes]
rs12414765	0.84[EUR][1000 genomes]
rs12415296	0.94[ASN][1000 genomes]
rs12571480	0.84[EUR][1000 genomes]
rs17619615	0.99[ASN][1000 genomes]
rs1909413	0.83[EUR][1000 genomes]
rs1909414	0.83[EUR][1000 genomes]
rs1909415	0.83[EUR][1000 genomes]
rs1909416	0.83[EUR][1000 genomes]
rs1909425	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133469	0.84[EUR][1000 genomes]
rs2133470	0.84[EUR][1000 genomes]
rs2173518	0.84[EUR][1000 genomes]
rs2173519	0.84[EUR][1000 genomes]
rs2173521	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2384239	0.84[EUR][1000 genomes]
rs2384240	0.84[EUR][1000 genomes]
rs2384241	0.84[EUR][1000 genomes]
rs2384246	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28891704	0.84[EUR][1000 genomes]
rs4307632	0.84[EUR][1000 genomes]
rs4468253	0.83[EUR][1000 genomes]
rs4935430	0.84[EUR][1000 genomes]
rs4935433	0.84[EUR][1000 genomes]
rs5004996	0.84[EUR][1000 genomes]
rs57735520	0.99[ASN][1000 genomes]
rs60091591	0.84[EUR][1000 genomes]
rs60730935	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61284846	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74134554	0.84[EUR][1000 genomes]
rs74134556	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74134558	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74134567	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74134571	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74134573	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74134579	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1037480	chr10:55102814-55289571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2750963	chr10:55150127-55237139	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2755889	chr10:55150173-55278481	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1048399	chr10:55151470-55313737	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv520422	chr10:55152910-55184722	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55153400-55157000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr10:55154400-55157600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr10:55155800-55157400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:55156800-55157600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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