Variant report

Variant	rs74134567
Chromosome Location	chr10:55147291-55147292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10508995	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11003594	0.80[ASN][1000 genomes]
rs12411918	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12412145	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12414354	0.87[ASN][1000 genomes]
rs12414765	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12415296	0.87[ASN][1000 genomes]
rs12571480	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17619615	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1909410	0.82[ASN][1000 genomes]
rs1909412	0.82[ASN][1000 genomes]
rs1909413	0.83[EUR][1000 genomes]
rs1909414	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1909415	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1909416	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1909425	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2133469	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2133470	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2173518	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2173519	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2173520	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2173521	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2384239	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2384240	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2384241	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2384246	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28891704	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35133620	0.80[ASN][1000 genomes]
rs4307632	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4468253	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4614347	0.82[ASN][1000 genomes]
rs4935430	0.84[EUR][1000 genomes]
rs4935433	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5004996	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57735520	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60091591	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60730935	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61284846	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74134546	0.80[ASN][1000 genomes]
rs74134547	0.80[ASN][1000 genomes]
rs74134548	0.80[ASN][1000 genomes]
rs74134554	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74134556	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74134558	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74134571	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74134573	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74134579	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1037480	chr10:55102814-55289571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55147200-55147600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:55147200-55147600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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