Variant report

Variant	rs2173580
Chromosome Location	chr1:56036115-56036116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1499659	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1566399	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1695944	0.84[EUR][1000 genomes]
rs1780529	0.81[ASN][1000 genomes]
rs1892192	0.85[ASN][1000 genomes]
rs1909531	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2867947	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4927256	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6656588	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs904600	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs904603	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56025800-56038400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:56035000-56036400	Enhancers	Fetal Lung	lung
3	chr1:56035200-56036400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:56035400-56043200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56035600-56036400	Weak transcription	Osteobl	bone
6	chr1:56035600-56037200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:56035800-56036400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:56035800-56038000	Weak transcription	NHDF-Ad	bronchial
9	chr1:56035800-56038400	Weak transcription	NHLF	lung
10	chr1:56035800-56038600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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