Variant report

Variant	rs2174169
Chromosome Location	chr4:120794385-120794386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1027690	0.83[EUR][1000 genomes]
rs11098549	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1354338	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1503536	0.81[EUR][1000 genomes]
rs1503539	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1566784	0.80[EUR][1000 genomes]
rs1566785	0.83[EUR][1000 genomes]
rs1587734	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1587735	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16997613	0.83[EUR][1000 genomes]
rs1818166	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35200040	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35374249	0.83[EUR][1000 genomes]
rs36089364	0.83[EUR][1000 genomes]
rs4293770	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs719906	0.83[EUR][1000 genomes]
rs722766	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120793000-120794600	Enhancers	Fetal Intestine Large	intestine
2	chr4:120793800-120794600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:120793800-120794800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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