Variant report

Variant	rs1503539
Chromosome Location	chr4:120811913-120811914
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1027690	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11098549	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1354338	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1503536	0.81[EUR][1000 genomes]
rs1566785	0.82[EUR][1000 genomes]
rs1587734	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1587735	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16997613	0.82[EUR][1000 genomes]
rs1818166	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2174169	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35200040	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35374249	0.82[EUR][1000 genomes]
rs36089364	0.82[EUR][1000 genomes]
rs4293770	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs719906	0.82[EUR][1000 genomes]
rs722766	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv980254	chr4:120804285-120811932	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120811200-120812000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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