Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10513768	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10937018	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13066273	0.92[ASN][1000 genomes]
rs1402965	0.99[ASN][1000 genomes]
rs1522118	0.92[ASN][1000 genomes]
rs1522122	0.89[ASN][1000 genomes]
rs1608071	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1608073	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1608074	1.00[ASN][1000 genomes]
rs1608075	1.00[ASN][1000 genomes]
rs1915906	0.94[ASN][1000 genomes]
rs1915908	0.84[ASN][1000 genomes]
rs2140078	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34582044	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4376038	0.83[ASN][1000 genomes]
rs4501114	1.00[ASN][1000 genomes]
rs4855139	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4855140	0.91[ASN][1000 genomes]
rs6771471	1.00[ASN][1000 genomes]
rs6786266	1.00[ASN][1000 genomes]
rs6806300	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7618051	0.83[ASN][1000 genomes]
rs7652876	0.84[ASN][1000 genomes]
rs950198	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9809186	1.00[ASN][1000 genomes]
rs9833099	0.92[ASN][1000 genomes]
rs9840949	1.00[ASN][1000 genomes]
rs9850524	0.88[ASN][1000 genomes]
rs9863729	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1000756	chr3:179672703-179827373	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1012880	chr3:179772283-179835563	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv275254	chr3:179786726-179802042	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179792400-179809800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:179796400-179797200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:179796400-179797200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:179796600-179797200	Enhancers	HUES48 Cell Line	embryonic stem cell

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