Variant report

Variant	rs4376038
Chromosome Location	chr3:179832076-179832077
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10513768	0.88[ASN][1000 genomes]
rs10937018	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13066273	0.90[ASN][1000 genomes]
rs1402965	0.83[ASN][1000 genomes]
rs1522118	0.91[ASN][1000 genomes]
rs1522122	0.94[ASN][1000 genomes]
rs1608071	0.83[ASN][1000 genomes]
rs1608073	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1608074	0.83[ASN][1000 genomes]
rs1608075	0.83[ASN][1000 genomes]
rs1915906	0.88[ASN][1000 genomes]
rs1915908	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1921676	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1950124	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2049472	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2140078	0.82[ASN][1000 genomes]
rs2177130	0.83[ASN][1000 genomes]
rs34582044	0.83[ASN][1000 genomes]
rs4501114	0.83[ASN][1000 genomes]
rs4855139	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4855140	0.92[ASN][1000 genomes]
rs6767083	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6771471	0.83[ASN][1000 genomes]
rs6786266	0.83[ASN][1000 genomes]
rs6803764	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6806300	0.96[ASN][1000 genomes]
rs7618051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7635210	0.92[AFR][1000 genomes]
rs7652876	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs950198	0.87[ASN][1000 genomes]
rs9809186	0.83[ASN][1000 genomes]
rs9833099	0.90[ASN][1000 genomes]
rs9840949	0.83[ASN][1000 genomes]
rs9849935	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9851723	0.86[AFR][1000 genomes]
rs9857420	0.88[AFR][1000 genomes]
rs9863693	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9863729	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012880	chr3:179772283-179835563	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv275096	chr3:179831081-179833141	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179810600-179843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:179828200-179835000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:179828400-179832200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:179828400-179832200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:179828400-179832200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:179831800-179835400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:179832000-179832400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:179832000-179832600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr3:179832000-179834200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:179832000-179835200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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