Variant report
| Variant | rs9849935 |
|---|---|
| Chromosome Location | chr3:179838302-179838303 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10513768 | 0.81[ASN][1000 genomes] |
| rs10937018 | 0.84[ASN][1000 genomes] |
| rs13066273 | 0.83[ASN][1000 genomes] |
| rs1522118 | 0.83[ASN][1000 genomes] |
| rs1522122 | 0.84[ASN][1000 genomes] |
| rs1608073 | 0.83[ASN][1000 genomes] |
| rs1915906 | 0.82[ASN][1000 genomes] |
| rs1915908 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1950124 | 0.81[AMR][1000 genomes] |
| rs2049472 | 0.82[AFR][1000 genomes] |
| rs4376038 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4855139 | 0.82[ASN][1000 genomes] |
| rs4855140 | 0.85[ASN][1000 genomes] |
| rs6767083 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6803764 | 0.83[AFR][1000 genomes] |
| rs6806300 | 0.84[ASN][1000 genomes] |
| rs7618051 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7635210 | 0.83[AFR][1000 genomes] |
| rs7652876 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs950198 | 0.81[ASN][1000 genomes] |
| rs9833099 | 0.83[ASN][1000 genomes] |
| rs9863693 | 0.82[AFR][1000 genomes] |
| rs9863729 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534210 | chr3:179666123-179899347 | Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1012271 | chr3:179806875-180234871 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv878040 | chr3:179823887-180128288 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:179810600-179843600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
