Variant report

Variant	rs9851723
Chromosome Location	chr3:179847077-179847078
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10222466	0.82[EUR][1000 genomes]
rs10937020	0.90[EUR][1000 genomes]
rs11709960	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12487650	0.85[EUR][1000 genomes]
rs12631680	0.90[ASN][1000 genomes]
rs12636328	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1404744	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1525277	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1568859	0.85[EUR][1000 genomes]
rs1830044	0.90[ASN][1000 genomes]
rs1852121	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1852122	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1915908	0.89[AFR][1000 genomes]
rs1921676	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1950124	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2049472	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2339967	0.85[EUR][1000 genomes]
rs2339968	0.84[EUR][1000 genomes]
rs28703130	0.90[ASN][1000 genomes]
rs28865282	0.89[EUR][1000 genomes]
rs3849420	0.83[EUR][1000 genomes]
rs4376038	0.86[AFR][1000 genomes]
rs4854902	0.85[EUR][1000 genomes]
rs4854959	0.94[ASN][1000 genomes]
rs4854961	0.89[EUR][1000 genomes]
rs4854962	0.89[EUR][1000 genomes]
rs58582741	0.94[ASN][1000 genomes]
rs59555202	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60202080	0.90[ASN][1000 genomes]
rs62292260	0.91[ASN][1000 genomes]
rs6790229	0.82[EUR][1000 genomes]
rs6790465	0.82[EUR][1000 genomes]
rs6803764	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7618051	0.86[AFR][1000 genomes]
rs7621628	0.82[EUR][1000 genomes]
rs7635210	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7637854	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7637930	0.80[EUR][1000 genomes]
rs7649655	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7652876	0.88[AFR][1000 genomes]
rs9290696	0.85[EUR][1000 genomes]
rs9290697	0.80[EUR][1000 genomes]
rs9821124	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9837718	0.82[EUR][1000 genomes]
rs9857420	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9862989	0.80[EUR][1000 genomes]
rs9863693	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9880357	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179846400-179847400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr3:179846600-179847200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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