Variant report

Variant	rs7637854
Chromosome Location	chr3:179851636-179851637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12631680	0.82[ASN][1000 genomes]
rs1404744	0.80[EUR][1000 genomes]
rs1830044	0.82[ASN][1000 genomes]
rs1921676	0.82[EUR][1000 genomes]
rs1950124	0.82[EUR][1000 genomes]
rs2049472	0.82[EUR][1000 genomes]
rs28703130	0.82[ASN][1000 genomes]
rs4854959	0.87[ASN][1000 genomes]
rs58582741	0.89[ASN][1000 genomes]
rs59555202	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60202080	0.82[ASN][1000 genomes]
rs62292260	0.84[ASN][1000 genomes]
rs6803764	0.81[ASN][1000 genomes]
rs7635210	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7637930	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7649655	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9851723	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9857420	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9863693	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179847200-179853400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:179848600-179859600	Weak transcription	HMEC	breast
3	chr3:179849200-179852400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:179849200-179852800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:179849800-179852800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:179851200-179854600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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