Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12492526	0.84[EUR][1000 genomes]
rs12631680	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12631948	0.80[ASN][1000 genomes]
rs12637429	0.80[ASN][1000 genomes]
rs1404743	0.92[EUR][1000 genomes]
rs1404744	0.91[ASN][1000 genomes]
rs1568860	0.87[EUR][1000 genomes]
rs16831126	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1830044	0.95[ASN][1000 genomes]
rs28703130	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2879654	0.82[EUR][1000 genomes]
rs58582741	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59555202	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs60057308	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60202080	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62290558	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62292260	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67979781	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6803764	0.89[ASN][1000 genomes]
rs7635210	0.99[ASN][1000 genomes]
rs7637854	0.87[ASN][1000 genomes]
rs7649655	0.84[ASN][1000 genomes]
rs9851723	0.94[ASN][1000 genomes]
rs9857420	0.94[ASN][1000 genomes]
rs9871928	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179847200-179853400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:179848600-179859600	Weak transcription	HMEC	breast
3	chr3:179849200-179852400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:179849200-179852800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:179849800-179852800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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