Variant report

Variant	rs2178903
Chromosome Location	chr21:16668254-16668255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:16570442..16572661-chr21:16665803..16668621,2	MCF-7	breast:
2	chr21:16666480..16669393-chr21:16671838..16673538,2	MCF-7	breast:
3	chr21:16668080..16669974-chr21:16795633..16798229,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11088345	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12483494	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1304524	1.00[JPT][hapmap]
rs16981452	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16981457	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2178904	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2823199	1.00[JPT][hapmap]
rs2823208	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823210	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823218	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4816535	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4816537	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55916325	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57024216	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57072937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73892445	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73892447	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73892449	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73892454	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs969146	1.00[JPT][hapmap]
rs9977579	0.80[ASN][1000 genomes]
rs9980907	0.80[ASN][1000 genomes]
rs9984391	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1056659	chr21:16646531-16709391	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16662000-16670200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:16663200-16674400	Weak transcription	Psoas Muscle	Psoas
3	chr21:16663400-16676400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr21:16664800-16673200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr21:16665800-16672600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr21:16666000-16670200	Weak transcription	Fetal Kidney	kidney
7	chr21:16666000-16670600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr21:16666000-16672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr21:16666000-16673200	Weak transcription	HSMMtube	muscle
10	chr21:16666200-16669400	Weak transcription	HUVEC	blood vessel
11	chr21:16666200-16671600	Weak transcription	HMEC	breast
12	chr21:16666400-16671600	Weak transcription	NHEK	skin
13	chr21:16666400-16672200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr21:16668200-16669800	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links