Variant report
| Variant | rs9980907 |
|---|---|
| Chromosome Location | chr21:16693874-16693875 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11088345 | 0.93[ASN][1000 genomes] |
| rs12483494 | 0.93[ASN][1000 genomes] |
| rs16981452 | 0.93[ASN][1000 genomes] |
| rs16981457 | 0.93[ASN][1000 genomes] |
| rs2178903 | 0.80[ASN][1000 genomes] |
| rs2178904 | 0.87[ASN][1000 genomes] |
| rs2823208 | 0.80[ASN][1000 genomes] |
| rs2823210 | 0.80[ASN][1000 genomes] |
| rs2823218 | 0.93[ASN][1000 genomes] |
| rs4816535 | 0.93[ASN][1000 genomes] |
| rs4816537 | 0.81[ASN][1000 genomes] |
| rs55916325 | 0.93[ASN][1000 genomes] |
| rs57024216 | 0.93[ASN][1000 genomes] |
| rs57072937 | 0.80[ASN][1000 genomes] |
| rs73892445 | 0.80[ASN][1000 genomes] |
| rs73892447 | 0.93[ASN][1000 genomes] |
| rs73892449 | 0.93[ASN][1000 genomes] |
| rs73892454 | 0.93[ASN][1000 genomes] |
| rs9977579 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9984391 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1063385 | chr21:16521617-16926212 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1056659 | chr21:16646531-16709391 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1064280 | chr21:16664312-17049272 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | esv1812556 | chr21:16690063-16736368 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:16691400-16696000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
