Variant report

Variant	rs2179178
Chromosome Location	chr6:11363341-11363342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11363261..11366684-chr6:11366769..11368460,3	MCF-7	breast:
2	chr6:11363308..11365287-chr6:11389526..11391473,2	MCF-7	breast:
3	chr6:11345079..11346896-chr6:11363050..11365250,2	K562	blood:
4	chr6:11361742..11363799-chr6:11390474..11392011,2	MCF-7	breast:
5	chr6:11358576..11361790-chr6:11363070..11366053,4	MCF-7	breast:
6	chr6:11339887..11342299-chr6:11361648..11364583,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1013678	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10947204	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3798752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4403261	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4711271	0.83[AMR][1000 genomes]
rs4711272	0.82[AMR][1000 genomes]
rs5019594	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6918440	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6934773	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7738560	0.82[AMR][1000 genomes]
rs7768351	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9296000	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9348868	0.82[AMR][1000 genomes]
rs9357127	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11355000-11364000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:11355000-11367400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:11355200-11365200	Weak transcription	Left Ventricle	heart
4	chr6:11355200-11370800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:11357200-11371200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:11357600-11364200	Weak transcription	Right Atrium	heart
7	chr6:11357600-11365600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:11357600-11367600	Weak transcription	Aorta	Aorta
9	chr6:11357800-11364600	Weak transcription	HUVEC	blood vessel
10	chr6:11357800-11365200	Weak transcription	Lung	lung
11	chr6:11357800-11366600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:11357800-11370400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:11358000-11364400	Weak transcription	Spleen	Spleen
14	chr6:11358000-11367800	Weak transcription	Small Intestine	intestine
15	chr6:11358200-11367400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:11358800-11366400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:11358800-11367000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:11359400-11369800	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:11359600-11364200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:11359600-11366400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:11359800-11364000	ZNF genes & repeats	GM12878-XiMat	blood
22	chr6:11360000-11363600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:11360000-11364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:11360000-11364200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:11360000-11366400	Weak transcription	Esophagus	oesophagus
26	chr6:11360200-11363600	Weak transcription	NHEK	skin
27	chr6:11360200-11366800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr6:11360400-11364200	Weak transcription	Placenta	Placenta
29	chr6:11360600-11364400	Weak transcription	Fetal Thymus	thymus
30	chr6:11360600-11364800	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr6:11360800-11364200	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:11360800-11364400	Strong transcription	Primary B cells from peripheral blood	blood
33	chr6:11360800-11364600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr6:11361000-11366400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:11361200-11364200	Weak transcription	Stomach Mucosa	stomach
36	chr6:11361200-11364400	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr6:11361200-11365800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
38	chr6:11361200-11366800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:11361200-11370600	Weak transcription	Thymus	Thymus
40	chr6:11361400-11364800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr6:11361400-11365000	Strong transcription	Primary B cells from cord blood	blood
42	chr6:11361600-11367200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:11362000-11363400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:11362200-11364200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:11362200-11365400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:11362400-11363400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:11362400-11363600	Weak transcription	Primary T cells from cord blood	blood
48	chr6:11362400-11364600	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr6:11362600-11363600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:11362600-11366400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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