Variant report

Variant	rs10947204
Chromosome Location	chr6:11359021-11359022
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11229074..11235774-chr6:11355894..11361748,7	MCF-7	breast:
2	chr6:11349169..11351708-chr6:11358591..11361451,2	K562	blood:
3	chr6:11344982..11346755-chr6:11356933..11360396,3	MCF-7	breast:
4	chr6:11357315..11359191-chr6:11373053..11375273,2	K562	blood:
5	chr6:11356223..11359281-chr6:11494815..11498233,5	MCF-7	breast:
6	chr6:11357820..11359375-chr6:11361322..11362999,2	MCF-7	breast:
7	chr6:11341903..11348078-chr6:11354165..11360055,8	MCF-7	breast:
8	chr6:11358576..11361790-chr6:11363070..11366053,4	MCF-7	breast:
9	chr6:11356402..11359256-chr6:11386897..11390575,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1012502	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1013678	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193099	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12199545	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12204242	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12208626	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12210644	0.80[ASN][1000 genomes]
rs12215372	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12215715	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12215894	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13198555	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13217274	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1810451	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2179178	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3798752	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4276494	0.81[ASN][1000 genomes]
rs4533978	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4632886	0.80[ASN][1000 genomes]
rs4711271	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4711272	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6916534	0.82[ASN][1000 genomes]
rs6932496	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7738560	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7768351	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9348868	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357127	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9461714	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9469034	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11353600-11359200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:11353800-11360000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr6:11354800-11359200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:11355000-11364000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:11355000-11367400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:11355200-11359200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:11355200-11360000	Weak transcription	Right Ventricle	heart
8	chr6:11355200-11360400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:11355200-11361000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:11355200-11365200	Weak transcription	Left Ventricle	heart
11	chr6:11355200-11370800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:11355400-11359400	Weak transcription	Thymus	Thymus
13	chr6:11356000-11360000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:11356400-11359800	Enhancers	Stomach Mucosa	stomach
15	chr6:11357000-11360400	Enhancers	Placenta	Placenta
16	chr6:11357200-11362800	Enhancers	HepG2	liver
17	chr6:11357200-11371200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:11357400-11359200	Enhancers	Esophagus	oesophagus
19	chr6:11357600-11359200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:11357600-11359800	Strong transcription	GM12878-XiMat	blood
21	chr6:11357600-11360800	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr6:11357600-11362600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:11357600-11364200	Weak transcription	Right Atrium	heart
24	chr6:11357600-11365600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:11357600-11367600	Weak transcription	Aorta	Aorta
26	chr6:11357800-11359200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:11357800-11359400	Weak transcription	NHEK	skin
28	chr6:11357800-11360200	Weak transcription	Fetal Thymus	thymus
29	chr6:11357800-11364600	Weak transcription	HUVEC	blood vessel
30	chr6:11357800-11365200	Weak transcription	Lung	lung
31	chr6:11357800-11366600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:11357800-11370400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:11358000-11359600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:11358000-11364400	Weak transcription	Spleen	Spleen
35	chr6:11358000-11367800	Weak transcription	Small Intestine	intestine
36	chr6:11358200-11359200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr6:11358200-11359400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:11358200-11359600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:11358200-11360600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:11358200-11360800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr6:11358200-11367400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:11358600-11359400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr6:11358600-11360000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:11358600-11360600	Genic enhancers	Monocytes-CD14+_RO01746	blood
45	chr6:11358600-11361000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
46	chr6:11358800-11359400	Strong transcription	Primary T cells from cord blood	blood
47	chr6:11358800-11359400	Enhancers	Brain Hippocampus Middle	brain
48	chr6:11358800-11360200	Enhancers	Adipose Nuclei	Adipose
49	chr6:11358800-11360600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr6:11358800-11366400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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