Variant report

Variant	rs6916534
Chromosome Location	chr6:11398846-11398847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11396064..11399493-chr6:11408571..11410714,3	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1012502	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1013678	0.82[ASN][1000 genomes]
rs10947204	0.82[ASN][1000 genomes]
rs12193099	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12199545	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12204242	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12208626	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12210644	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12215372	0.91[EUR][1000 genomes]
rs12215715	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12215894	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13198555	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13217274	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4276494	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4330532	0.86[AMR][1000 genomes]
rs4368806	0.84[AMR][1000 genomes]
rs4370358	0.84[AMR][1000 genomes]
rs4533978	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4632886	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711271	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4711272	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6901388	0.88[AMR][1000 genomes]
rs6904848	0.83[AMR][1000 genomes]
rs6908442	0.85[AMR][1000 genomes]
rs6919269	0.86[AMR][1000 genomes]
rs6931599	0.83[AMR][1000 genomes]
rs6932496	0.92[EUR][1000 genomes]
rs7738560	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7751151	0.86[AMR][1000 genomes]
rs7752735	0.86[AMR][1000 genomes]
rs7762454	0.83[AMR][1000 genomes]
rs7766220	0.88[AMR][1000 genomes]
rs7768351	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9348868	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357127	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9366788	0.86[AMR][1000 genomes]
rs9368701	0.89[ASN][1000 genomes]
rs9461714	0.87[EUR][1000 genomes]
rs9469034	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11394000-11405600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:11394800-11403600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:11397400-11400200	Enhancers	Fetal Intestine Large	intestine
4	chr6:11397600-11400000	Enhancers	Fetal Intestine Small	intestine
5	chr6:11397800-11399600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:11397800-11400000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:11398000-11399000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:11398000-11399000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr6:11398000-11399200	Enhancers	Liver	Liver
10	chr6:11398000-11399400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:11398400-11402800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:11398600-11399000	Enhancers	Adipose Nuclei	Adipose
13	chr6:11398600-11399000	Enhancers	Fetal Kidney	kidney
14	chr6:11398600-11399200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:11398600-11399200	Enhancers	A549	lung
16	chr6:11398600-11399400	Flanking Active TSS	HepG2	liver
17	chr6:11398600-11400400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:11398800-11399200	Enhancers	Fetal Lung	lung
19	chr6:11398800-11399400	Weak transcription	Lung	lung
20	chr6:11398800-11399600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:11398800-11399800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:11398800-11403400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:11398800-11405200	Weak transcription	Spleen	Spleen

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