Variant report

Variant	rs9368701
Chromosome Location	chr6:11410490-11410491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12199545	0.82[ASN][1000 genomes]
rs12204242	0.82[ASN][1000 genomes]
rs12208626	0.80[ASN][1000 genomes]
rs12210644	0.89[ASN][1000 genomes]
rs12215715	0.82[ASN][1000 genomes]
rs12215894	0.82[ASN][1000 genomes]
rs13198555	0.89[ASN][1000 genomes]
rs13217274	0.82[ASN][1000 genomes]
rs4276494	0.89[ASN][1000 genomes]
rs4330532	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4368806	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4370358	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4632886	0.89[ASN][1000 genomes]
rs6901388	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6904848	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6908442	0.82[AMR][1000 genomes]
rs6916534	0.89[ASN][1000 genomes]
rs6919269	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6931599	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7751151	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7752735	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7762454	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7766220	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9366788	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11399000-11410800	Weak transcription	Adipose Nuclei	Adipose
2	chr6:11405200-11412400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:11405400-11412000	Weak transcription	Fetal Kidney	kidney
4	chr6:11405400-11419400	Weak transcription	Aorta	Aorta
5	chr6:11405600-11410800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:11405800-11411000	Weak transcription	GM12878-XiMat	blood
7	chr6:11405800-11412400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:11406000-11412400	Weak transcription	Spleen	Spleen
9	chr6:11406600-11410800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:11406600-11412400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:11406600-11414600	Weak transcription	Primary B cells from cord blood	blood
12	chr6:11406800-11410800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:11406800-11410800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:11406800-11411200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:11408000-11411000	Weak transcription	A549	lung
16	chr6:11409200-11410600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:11409600-11412600	Enhancers	HUVEC	blood vessel
18	chr6:11409800-11412600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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