Variant report

Variant	rs4632886
Chromosome Location	chr6:11402562-11402563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11385040..11387245-chr6:11401910..11404147,2	K562	blood:
2	chr6:11402014..11403682-chr6:11416152..11418504,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233656	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1012502	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1013678	0.80[ASN][1000 genomes]
rs10947204	0.80[ASN][1000 genomes]
rs12193099	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12199545	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12204242	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12208626	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12210644	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215372	0.90[EUR][1000 genomes]
rs12215715	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12215894	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13198555	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13217274	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4276494	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4330532	0.84[AMR][1000 genomes]
rs4368806	0.82[AMR][1000 genomes]
rs4370358	0.82[AMR][1000 genomes]
rs4533978	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4711271	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4711272	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6901388	0.86[AMR][1000 genomes]
rs6904848	0.81[AMR][1000 genomes]
rs6908442	0.83[AMR][1000 genomes]
rs6916534	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6919269	0.84[AMR][1000 genomes]
rs6931599	0.81[AMR][1000 genomes]
rs6932496	0.92[EUR][1000 genomes]
rs7738560	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7751151	0.84[AMR][1000 genomes]
rs7752735	0.84[AMR][1000 genomes]
rs7762454	0.81[AMR][1000 genomes]
rs7766220	0.86[AMR][1000 genomes]
rs7768351	0.81[EUR][1000 genomes]
rs9348868	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9357127	0.81[EUR][1000 genomes]
rs9366788	0.84[AMR][1000 genomes]
rs9368701	0.89[ASN][1000 genomes]
rs9461714	0.86[EUR][1000 genomes]
rs9469034	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11394000-11405600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:11394800-11403600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:11398400-11402800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:11398800-11403400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:11398800-11405200	Weak transcription	Spleen	Spleen
6	chr6:11399000-11403600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:11399000-11410800	Weak transcription	Adipose Nuclei	Adipose
8	chr6:11399400-11403600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:11399600-11403200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:11400000-11403200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:11402400-11403400	Weak transcription	HepG2	liver
12	chr6:11402400-11403600	Weak transcription	Lung	lung

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