Variant report

Variant	rs2184040
Chromosome Location	chr1:170232873-170232874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10919345	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11577543	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11802884	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12119099	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12404913	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1332954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1332955	0.94[ASN][1000 genomes]
rs2027010	0.90[JPT][hapmap]
rs2095134	0.90[JPT][hapmap]
rs2151244	0.93[CHD][hapmap];0.90[JPT][hapmap]
rs2151245	0.90[JPT][hapmap]
rs2184041	0.97[ASN][1000 genomes]
rs2184042	0.93[CHD][hapmap];0.90[JPT][hapmap]
rs2251095	0.97[ASN][1000 genomes]
rs2254605	0.95[ASN][1000 genomes]
rs2254608	0.94[ASN][1000 genomes]
rs2254609	0.94[ASN][1000 genomes]
rs2265323	0.97[ASN][1000 genomes]
rs2990635	0.93[ASN][1000 genomes]
rs2990636	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2990637	0.95[ASN][1000 genomes]
rs2990638	0.96[ASN][1000 genomes]
rs2990639	0.97[ASN][1000 genomes]
rs2990641	0.96[ASN][1000 genomes]
rs2998163	0.97[ASN][1000 genomes]
rs2998165	0.97[ASN][1000 genomes]
rs2998166	0.94[ASN][1000 genomes]
rs3795614	0.94[ASN][1000 genomes]
rs3795615	0.94[ASN][1000 genomes]
rs4128789	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4656751	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55664422	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55834059	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56185457	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6690338	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700678	0.89[JPT][hapmap]
rs7524746	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170231200-170233800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:170232800-170233200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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