Variant report

Variant	rs4128789
Chromosome Location	chr1:170242288-170242289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10919345	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11577543	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11802884	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12119099	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12404913	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12745998	0.80[ASN][1000 genomes]
rs1332954	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1332955	0.94[ASN][1000 genomes]
rs2027010	0.90[JPT][hapmap]
rs2095134	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2151244	0.91[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2151245	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2184040	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2184041	0.93[ASN][1000 genomes]
rs2184042	0.91[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2251095	0.93[ASN][1000 genomes]
rs2254605	0.94[ASN][1000 genomes]
rs2254608	0.94[ASN][1000 genomes]
rs2254609	0.94[ASN][1000 genomes]
rs2265323	0.93[ASN][1000 genomes]
rs2990635	0.97[ASN][1000 genomes]
rs2990636	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2990637	0.94[ASN][1000 genomes]
rs2990638	0.94[ASN][1000 genomes]
rs2990639	0.93[ASN][1000 genomes]
rs2990641	0.94[ASN][1000 genomes]
rs2998163	0.93[ASN][1000 genomes]
rs2998165	0.93[ASN][1000 genomes]
rs2998166	0.91[ASN][1000 genomes]
rs3795614	0.94[ASN][1000 genomes]
rs3795615	0.94[ASN][1000 genomes]
rs4656751	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55664422	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55834059	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56185457	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6690338	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6700678	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs7522187	0.81[ASN][1000 genomes]
rs7524746	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4128789	C1orf156	cis	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170241200-170242800	Weak transcription	Left Ventricle	heart
2	chr1:170242000-170243800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:170242200-170242800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:170242200-170242800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:170242200-170243400	Enhancers	NHDF-Ad	bronchial
6	chr1:170242200-170243600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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