Variant report

Variant	rs2184305
Chromosome Location	chr14:32326181-32326182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10147479	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151379	0.81[EUR][1000 genomes]
rs10162515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10162516	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17098210	0.81[EUR][1000 genomes]
rs17098211	0.81[EUR][1000 genomes]
rs2184304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56173857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60633646	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571471	0.81[EUR][1000 genomes]
rs7144910	0.81[EUR][1000 genomes]
rs7145251	0.81[EUR][1000 genomes]
rs7146383	0.81[EUR][1000 genomes]
rs7148746	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149861	0.81[EUR][1000 genomes]
rs7160459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8005084	0.81[EUR][1000 genomes]
rs8008432	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8009296	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv901593	chr14:32282564-32350371	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv526200	chr14:32308511-32454372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32281800-32330200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr14:32294200-32328800	Weak transcription	Ovary	ovary
3	chr14:32294800-32328000	Weak transcription	Left Ventricle	heart
4	chr14:32295000-32332800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:32309200-32330000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:32311600-32328000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr14:32313000-32327200	Weak transcription	Fetal Intestine Large	intestine
8	chr14:32313000-32334400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:32313200-32327600	Weak transcription	Stomach Mucosa	stomach
10	chr14:32313800-32326800	Weak transcription	Pancreas	Pancrea
11	chr14:32313800-32328200	Weak transcription	Gastric	stomach
12	chr14:32314400-32330600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:32318600-32327200	Weak transcription	Spleen	Spleen
14	chr14:32319600-32327800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:32319800-32327600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr14:32321200-32328000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr14:32322800-32329400	Weak transcription	Primary T cells from cord blood	blood
18	chr14:32323800-32327000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:32324000-32326600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:32324200-32328000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr14:32325000-32327400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:32325200-32327600	Weak transcription	HepG2	liver
23	chr14:32325800-32326600	Strong transcription	Fetal Stomach	stomach
24	chr14:32326000-32326200	ZNF genes & repeats	Lung	lung
25	chr14:32326000-32326400	ZNF genes & repeats	Fetal Intestine Small	intestine

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