Variant report

Variant	rs7148746
Chromosome Location	chr14:32330274-32330275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10143144	1.00[CEU][hapmap]
rs10147479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10148038	1.00[CEU][hapmap]
rs10150831	1.00[CEU][hapmap]
rs10151156	1.00[CEU][hapmap]
rs10151379	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10162515	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10162516	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10348	0.88[YRI][hapmap]
rs11156716	0.84[AFR][1000 genomes]
rs1129622	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs1129623	0.84[AFR][1000 genomes]
rs1430424	1.00[CEU][hapmap]
rs17098168	1.00[CEU][hapmap]
rs17098171	1.00[CEU][hapmap]
rs17098197	1.00[CEU][hapmap]
rs17098210	0.81[EUR][1000 genomes]
rs17098211	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1982013	1.00[CEU][hapmap]
rs1982014	1.00[CEU][hapmap]
rs2184304	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2184305	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55764900	0.93[AFR][1000 genomes]
rs56173857	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60633646	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571449	1.00[CEU][hapmap]
rs6571456	1.00[CEU][hapmap]
rs6571466	1.00[CEU][hapmap]
rs6571467	1.00[CEU][hapmap]
rs6571471	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7140277	1.00[CEU][hapmap]
rs7140475	0.82[AFR][1000 genomes]
rs7141477	1.00[CEU][hapmap]
rs7143532	1.00[CEU][hapmap]
rs7144178	1.00[CEU][hapmap]
rs7144910	0.81[EUR][1000 genomes]
rs7145251	0.81[EUR][1000 genomes]
rs7146383	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7149861	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7151198	1.00[CEU][hapmap]
rs7153885	1.00[CEU][hapmap]
rs7156907	1.00[CEU][hapmap]
rs7159193	1.00[CEU][hapmap]
rs7160459	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7161628	1.00[CEU][hapmap]
rs8005084	0.81[EUR][1000 genomes]
rs8005763	1.00[CEU][hapmap]
rs8008432	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8008468	0.94[AFR][1000 genomes]
rs8009012	1.00[CEU][hapmap]
rs8009296	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8013469	0.87[AFR][1000 genomes]
rs8018137	1.00[CEU][hapmap]
rs8020874	1.00[CEU][hapmap]
rs8021182	1.00[CEU][hapmap]
rs970489	1.00[CEU][hapmap]
rs9743878	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv901593	chr14:32282564-32350371	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv526200	chr14:32308511-32454372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7148746	TRAP1	trans	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32295000-32332800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:32313000-32334400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:32314400-32330600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:32330000-32330400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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