Variant report

Variant	rs8008468
Chromosome Location	chr14:32333632-32333633
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10132352	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10139417	1.00[ASN][1000 genomes]
rs10147479	0.90[AFR][1000 genomes]
rs10162515	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs10162516	0.93[AFR][1000 genomes]
rs10348	0.88[YRI][hapmap]
rs1129622	0.94[YRI][hapmap]
rs11621686	0.84[EUR][1000 genomes]
rs11848353	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11848392	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17098218	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17098247	0.87[EUR][1000 genomes]
rs17098251	0.87[EUR][1000 genomes]
rs17379796	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs17379852	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs17379887	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs17464234	0.82[EUR][1000 genomes]
rs17464629	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs17464712	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs17464726	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs1953269	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs28492902	1.00[ASN][1000 genomes]
rs28637268	1.00[ASN][1000 genomes]
rs3993	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4981135	0.81[AFR][1000 genomes]
rs55764900	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56173857	0.87[AFR][1000 genomes]
rs60633646	0.90[AFR][1000 genomes]
rs6571472	0.83[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571473	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7140475	0.83[AFR][1000 genomes]
rs7147907	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7148175	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7148196	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7148222	0.93[EUR][1000 genomes]
rs7148561	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7148746	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7153389	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7153738	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73259069	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73259070	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8004536	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8004792	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8005547	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8006327	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8008432	0.91[AFR][1000 genomes]
rs8009002	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8009030	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8009753	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8013469	0.88[AFR][1000 genomes]
rs8016264	0.92[CEU][hapmap]
rs8016527	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8020792	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv901593	chr14:32282564-32350371	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv526200	chr14:32308511-32454372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32313000-32334400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links