Variant report

Variant	rs7144178
Chromosome Location	chr14:32294162-32294163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10047861	1.00[EUR][1000 genomes]
rs10132862	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137974	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10139914	0.85[EUR][1000 genomes]
rs10142679	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143144	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10148038	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10149668	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10150831	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151156	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10151379	1.00[CEU][hapmap]
rs10162515	1.00[CEU][hapmap]
rs11846852	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11847014	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11847815	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11848462	1.00[EUR][1000 genomes]
rs11850880	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379320	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1430424	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17098168	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17098171	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17098197	1.00[CEU][hapmap]
rs17098211	1.00[CEU][hapmap]
rs1982013	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1982014	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2115957	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2120135	1.00[EUR][1000 genomes]
rs2120137	0.87[EUR][1000 genomes]
rs2120138	0.93[EUR][1000 genomes]
rs2163302	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2378899	1.00[CEU][hapmap]
rs2378900	1.00[EUR][1000 genomes]
rs2378934	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28446445	1.00[EUR][1000 genomes]
rs28532719	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28806946	1.00[EUR][1000 genomes]
rs55674235	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58097888	1.00[EUR][1000 genomes]
rs58213271	0.93[EUR][1000 genomes]
rs58280106	0.93[EUR][1000 genomes]
rs58900150	1.00[EUR][1000 genomes]
rs59002501	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59679301	1.00[EUR][1000 genomes]
rs60654485	0.93[EUR][1000 genomes]
rs6571449	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571455	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571456	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571460	0.87[EUR][1000 genomes]
rs6571465	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571466	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6571467	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6571471	1.00[CEU][hapmap]
rs7140146	1.00[CEU][hapmap]
rs7140277	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7140603	1.00[CEU][hapmap]
rs7141267	1.00[EUR][1000 genomes]
rs7141477	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7141722	1.00[EUR][1000 genomes]
rs7143532	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7145785	1.00[EUR][1000 genomes]
rs7146383	1.00[CEU][hapmap]
rs7147779	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148248	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148746	1.00[CEU][hapmap]
rs7149861	1.00[CEU][hapmap]
rs7150042	1.00[EUR][1000 genomes]
rs7150488	1.00[EUR][1000 genomes]
rs7151198	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7153885	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7154277	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7156676	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7156907	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7158443	1.00[EUR][1000 genomes]
rs7158652	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7159193	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7161628	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73253213	1.00[EUR][1000 genomes]
rs73255199	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74043606	1.00[EUR][1000 genomes]
rs8003033	1.00[EUR][1000 genomes]
rs8004616	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs8005763	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8005857	0.82[EUR][1000 genomes]
rs8009012	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8010697	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015179	1.00[EUR][1000 genomes]
rs8015640	1.00[EUR][1000 genomes]
rs8018137	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020874	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8021182	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8022324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs970488	0.85[AFR][1000 genomes]
rs970489	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9743593	1.00[EUR][1000 genomes]
rs9743878	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv901593	chr14:32282564-32350371	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32250600-32322400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:32281800-32330200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr14:32282600-32298000	Weak transcription	Fetal Stomach	stomach
4	chr14:32288400-32298200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:32288800-32295800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:32289200-32298200	Weak transcription	Placenta	Placenta
7	chr14:32291000-32299600	Weak transcription	Brain Anterior Caudate	brain
8	chr14:32291000-32310400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:32291200-32298600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:32292800-32295400	Weak transcription	Primary B cells from cord blood	blood
11	chr14:32292800-32296600	Weak transcription	Primary T cells from cord blood	blood
12	chr14:32293000-32295800	Weak transcription	HepG2	liver
13	chr14:32293200-32303600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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