Variant report
Variant | rs2163302 |
---|---|
Chromosome Location | chr14:32283838-32283839 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10047861 | 1.00[EUR][1000 genomes] |
rs10132862 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10137974 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10139914 | 0.85[EUR][1000 genomes] |
rs10142679 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10143144 | 0.93[EUR][1000 genomes] |
rs10148038 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10149668 | 1.00[EUR][1000 genomes] |
rs10150831 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10151156 | 1.00[EUR][1000 genomes] |
rs11846852 | 1.00[EUR][1000 genomes] |
rs11847014 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11847815 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11848462 | 1.00[EUR][1000 genomes] |
rs11850880 | 0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13379320 | 1.00[EUR][1000 genomes] |
rs1430424 | 1.00[EUR][1000 genomes] |
rs17098168 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17098171 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1982013 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1982014 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2115957 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2120135 | 1.00[EUR][1000 genomes] |
rs2120137 | 0.87[EUR][1000 genomes] |
rs2120138 | 0.93[EUR][1000 genomes] |
rs2378900 | 1.00[EUR][1000 genomes] |
rs2378934 | 1.00[EUR][1000 genomes] |
rs28446445 | 1.00[EUR][1000 genomes] |
rs28532719 | 1.00[EUR][1000 genomes] |
rs28806946 | 1.00[EUR][1000 genomes] |
rs28862034 | 1.00[EUR][1000 genomes] |
rs28864375 | 0.93[EUR][1000 genomes] |
rs55674235 | 0.93[EUR][1000 genomes] |
rs58097888 | 1.00[EUR][1000 genomes] |
rs58213271 | 0.93[EUR][1000 genomes] |
rs58280106 | 0.93[EUR][1000 genomes] |
rs58900150 | 1.00[EUR][1000 genomes] |
rs59002501 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs59679301 | 1.00[EUR][1000 genomes] |
rs60654485 | 0.93[EUR][1000 genomes] |
rs6571449 | 1.00[EUR][1000 genomes] |
rs6571455 | 1.00[EUR][1000 genomes] |
rs6571456 | 1.00[EUR][1000 genomes] |
rs6571460 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6571465 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6571466 | 1.00[EUR][1000 genomes] |
rs6571467 | 1.00[EUR][1000 genomes] |
rs7140277 | 1.00[EUR][1000 genomes] |
rs7141267 | 1.00[EUR][1000 genomes] |
rs7141477 | 1.00[EUR][1000 genomes] |
rs7141722 | 1.00[EUR][1000 genomes] |
rs7143532 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7144178 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7145785 | 1.00[EUR][1000 genomes] |
rs7147779 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7148248 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7150042 | 1.00[EUR][1000 genomes] |
rs7150488 | 1.00[EUR][1000 genomes] |
rs7151198 | 1.00[EUR][1000 genomes] |
rs7153885 | 1.00[EUR][1000 genomes] |
rs7154277 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7156676 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7156907 | 1.00[EUR][1000 genomes] |
rs7158443 | 1.00[EUR][1000 genomes] |
rs7158652 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7159193 | 1.00[EUR][1000 genomes] |
rs7159319 | 0.93[EUR][1000 genomes] |
rs7161628 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73253213 | 1.00[EUR][1000 genomes] |
rs73255199 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74043606 | 1.00[EUR][1000 genomes] |
rs8003033 | 1.00[EUR][1000 genomes] |
rs8004616 | 0.93[EUR][1000 genomes] |
rs8005763 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs8005857 | 0.82[EUR][1000 genomes] |
rs8009012 | 1.00[EUR][1000 genomes] |
rs8010697 | 1.00[EUR][1000 genomes] |
rs8015179 | 1.00[EUR][1000 genomes] |
rs8015640 | 1.00[EUR][1000 genomes] |
rs8018137 | 1.00[EUR][1000 genomes] |
rs8020874 | 1.00[EUR][1000 genomes] |
rs8021182 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs8022324 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs970489 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9743593 | 1.00[EUR][1000 genomes] |
rs9743878 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv564180 | chr14:31958566-32368934 | Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
2 | nsv564181 | chr14:31958761-32363980 | Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
3 | nsv564182 | chr14:32110519-32584337 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
4 | nsv1046526 | chr14:32110537-32567426 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
5 | nsv901593 | chr14:32282564-32350371 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:32250600-32322400 | Weak transcription | Primary T helper cells fromperipheralblood | blood |
2 | chr14:32263000-32287400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
3 | chr14:32280000-32284000 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
4 | chr14:32280000-32292200 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
5 | chr14:32280800-32287000 | Weak transcription | Adipose Nuclei | Adipose |
6 | chr14:32281800-32330200 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |
7 | chr14:32282600-32298000 | Weak transcription | Fetal Stomach | stomach |