Variant report

Variant	rs7158443
Chromosome Location	chr14:32147017-32147018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32146895..32147481-chr14:32713372..32714254,2	MCF-7	breast:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10047861	1.00[EUR][1000 genomes]
rs10132862	1.00[EUR][1000 genomes]
rs10137974	1.00[EUR][1000 genomes]
rs10139914	0.85[EUR][1000 genomes]
rs10142679	1.00[EUR][1000 genomes]
rs10143144	0.93[EUR][1000 genomes]
rs10148038	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10149668	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10150831	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10151156	1.00[EUR][1000 genomes]
rs11156681	1.00[ASN][1000 genomes]
rs11846852	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11847014	1.00[EUR][1000 genomes]
rs11847815	1.00[EUR][1000 genomes]
rs11848462	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850880	1.00[EUR][1000 genomes]
rs12884784	1.00[ASN][1000 genomes]
rs12894985	1.00[EUR][1000 genomes]
rs13379320	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430424	1.00[EUR][1000 genomes]
rs17098019	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098168	1.00[EUR][1000 genomes]
rs17098171	0.93[EUR][1000 genomes]
rs1982013	1.00[EUR][1000 genomes]
rs1982014	1.00[EUR][1000 genomes]
rs2034070	0.86[EUR][1000 genomes]
rs2115957	1.00[EUR][1000 genomes]
rs2120135	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2120137	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2120138	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2163302	1.00[EUR][1000 genomes]
rs2378899	1.00[EUR][1000 genomes]
rs2378900	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2378934	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28446445	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28532719	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28580449	0.93[EUR][1000 genomes]
rs28637268	0.83[AFR][1000 genomes]
rs28806946	1.00[EUR][1000 genomes]
rs28862034	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28864375	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4981882	1.00[ASN][1000 genomes]
rs55674235	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58097888	1.00[EUR][1000 genomes]
rs58213271	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58280106	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58900150	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59002501	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59679301	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60654485	0.93[EUR][1000 genomes]
rs6571449	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571451	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6571455	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571456	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571460	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6571465	1.00[EUR][1000 genomes]
rs6571466	1.00[EUR][1000 genomes]
rs6571467	1.00[EUR][1000 genomes]
rs7140277	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141267	1.00[EUR][1000 genomes]
rs7141477	1.00[EUR][1000 genomes]
rs7141722	1.00[EUR][1000 genomes]
rs7143532	1.00[EUR][1000 genomes]
rs7144178	1.00[EUR][1000 genomes]
rs7145785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7147779	1.00[EUR][1000 genomes]
rs7148248	1.00[EUR][1000 genomes]
rs7150042	1.00[EUR][1000 genomes]
rs7150488	1.00[EUR][1000 genomes]
rs7150851	1.00[EUR][1000 genomes]
rs7151198	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153885	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154277	1.00[EUR][1000 genomes]
rs7156676	1.00[EUR][1000 genomes]
rs7156907	1.00[EUR][1000 genomes]
rs7158652	1.00[EUR][1000 genomes]
rs7158693	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7159193	1.00[EUR][1000 genomes]
rs7159319	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7161592	0.93[EUR][1000 genomes]
rs7161628	1.00[EUR][1000 genomes]
rs73253213	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73253245	1.00[ASN][1000 genomes]
rs73255199	1.00[EUR][1000 genomes]
rs74043606	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8003033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004616	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8005763	1.00[EUR][1000 genomes]
rs8005857	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8009012	1.00[EUR][1000 genomes]
rs8010697	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015179	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015245	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8015640	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018137	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018529	0.86[EUR][1000 genomes]
rs8020874	1.00[EUR][1000 genomes]
rs8021182	1.00[EUR][1000 genomes]
rs8022324	1.00[EUR][1000 genomes]
rs970489	1.00[EUR][1000 genomes]
rs9743593	1.00[EUR][1000 genomes]
rs9743878	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901591	chr14:32093548-32202677	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	esv3414517	chr14:32144250-32168719	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32117000-32148200	Weak transcription	Pancreas	Pancrea
2	chr14:32135800-32170800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr14:32137200-32147400	Weak transcription	Left Ventricle	heart
4	chr14:32137200-32149400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr14:32138200-32147200	Weak transcription	Lung	lung
6	chr14:32139000-32147800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:32140600-32153200	Weak transcription	Primary T cells from cord blood	blood
8	chr14:32141400-32175800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr14:32141800-32151200	Weak transcription	Gastric	stomach
10	chr14:32142200-32166200	Weak transcription	Primary B cells from cord blood	blood
11	chr14:32142600-32147600	Weak transcription	Ovary	ovary
12	chr14:32143800-32147400	Weak transcription	Thymus	Thymus
13	chr14:32144000-32147200	Weak transcription	Fetal Intestine Small	intestine
14	chr14:32144400-32147200	Weak transcription	HSMM	muscle
15	chr14:32144600-32150800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr14:32145000-32150200	Weak transcription	Adipose Nuclei	Adipose
17	chr14:32145400-32150400	Weak transcription	Fetal Intestine Large	intestine
18	chr14:32145600-32147200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr14:32145600-32170600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr14:32145800-32147800	Weak transcription	Brain Substantia Nigra	brain
21	chr14:32146000-32148400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr14:32146000-32148800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:32146200-32147600	Weak transcription	Brain Angular Gyrus	brain
24	chr14:32146200-32148400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:32146400-32147200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:32146800-32147800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:32146800-32147800	Strong transcription	Spleen	Spleen
28	chr14:32146800-32148000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:32146800-32148000	Strong transcription	Stomach Smooth Muscle	stomach
30	chr14:32146800-32148400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr14:32147000-32147600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr14:32147000-32147600	Strong transcription	HepG2	liver
33	chr14:32147000-32148000	Strong transcription	Fetal Stomach	stomach
34	chr14:32147000-32148200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr14:32147000-32148200	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr14:32147000-32148400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links