Variant report

Variant	rs12884784
Chromosome Location	chr14:31974407-31974408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11156681	1.00[ASN][1000 genomes]
rs12881210	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17097947	0.87[EUR][1000 genomes]
rs17097971	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17098019	1.00[ASN][1000 genomes]
rs1999347	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2378894	0.83[AMR][1000 genomes]
rs28376341	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35258678	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35707828	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35847704	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6571449	1.00[ASN][1000 genomes]
rs7151198	1.00[ASN][1000 genomes]
rs7153885	1.00[ASN][1000 genomes]
rs7158443	1.00[ASN][1000 genomes]
rs73253245	1.00[ASN][1000 genomes]
rs8003033	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042776	chr14:31844026-32003929	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv542019	chr14:31844026-32003929	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv518956	chr14:31958761-31983371	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv901590	chr14:31958761-32012593	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31973400-31976200	Enhancers	Ovary	ovary
2	chr14:31973600-31974800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr14:31974000-31974800	Enhancers	HSMMtube	muscle
4	chr14:31974000-31975200	Enhancers	Aorta	Aorta
5	chr14:31974200-31974600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:31974200-31974800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:31974200-31974800	Enhancers	Stomach Smooth Muscle	stomach
8	chr14:31974200-31975000	Enhancers	Right Atrium	heart
9	chr14:31974200-31975200	Enhancers	Placenta	Placenta
10	chr14:31974200-31975200	Enhancers	Fetal Stomach	stomach
11	chr14:31974200-31975200	Enhancers	NHDF-Ad	bronchial
12	chr14:31974200-31975200	Enhancers	NHLF	lung
13	chr14:31974200-31975400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr14:31974200-31975400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr14:31974200-31975400	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr14:31974200-31975600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:31974200-31975600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:31974200-31975600	Enhancers	Adipose Nuclei	Adipose
19	chr14:31974200-31975600	Enhancers	Fetal Lung	lung
20	chr14:31974200-31975600	Enhancers	Fetal Muscle Leg	muscle
21	chr14:31974200-31975600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr14:31974200-31975600	Enhancers	Right Ventricle	heart
23	chr14:31974200-31975600	Enhancers	HSMM	muscle
24	chr14:31974200-31975600	Enhancers	Osteobl	bone
25	chr14:31974400-31974800	Enhancers	Fetal Heart	heart
26	chr14:31974400-31975000	Enhancers	Brain Cingulate Gyrus	brain
27	chr14:31974400-31975200	Enhancers	Colon Smooth Muscle	Colon

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