Variant report

Variant	rs17098019
Chromosome Location	chr14:32057513-32057514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10133190	0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs10137974	1.00[EUR][1000 genomes]
rs10142679	1.00[EUR][1000 genomes]
rs10143144	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10148038	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10149668	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10150831	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10151156	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11156681	1.00[ASN][1000 genomes]
rs11846852	0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs11847014	1.00[EUR][1000 genomes]
rs11847815	1.00[EUR][1000 genomes]
rs11848462	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884784	1.00[ASN][1000 genomes]
rs12894985	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430424	1.00[CEU][hapmap]
rs17098168	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs17098171	1.00[CEU][hapmap]
rs1982013	1.00[CEU][hapmap]
rs1982014	1.00[CEU][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap]
rs2034070	0.86[EUR][1000 genomes]
rs2120135	1.00[EUR][1000 genomes]
rs2120137	0.87[EUR][1000 genomes]
rs2120138	0.93[EUR][1000 genomes]
rs2378899	1.00[CEU][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2378900	1.00[EUR][1000 genomes]
rs2378934	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28446445	1.00[EUR][1000 genomes]
rs28532719	1.00[EUR][1000 genomes]
rs28580449	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28862034	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28864375	0.93[EUR][1000 genomes]
rs4981882	1.00[ASN][1000 genomes]
rs55674235	0.93[EUR][1000 genomes]
rs58097888	1.00[EUR][1000 genomes]
rs58213271	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58280106	0.93[EUR][1000 genomes]
rs58900150	1.00[EUR][1000 genomes]
rs59002501	1.00[EUR][1000 genomes]
rs59679301	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571449	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571451	1.00[ASN][1000 genomes]
rs6571455	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs6571456	1.00[CEU][hapmap];0.88[TSI][hapmap];1.00[EUR][1000 genomes]
rs6571460	0.87[EUR][1000 genomes]
rs6571466	1.00[CEU][hapmap]
rs6571467	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7140146	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs7140277	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7140603	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs7145785	1.00[EUR][1000 genomes]
rs7150042	1.00[EUR][1000 genomes]
rs7150851	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151198	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153885	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154277	1.00[EUR][1000 genomes]
rs7158443	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158693	0.86[AMR][1000 genomes]
rs7159193	1.00[CEU][hapmap]
rs7159319	0.93[EUR][1000 genomes]
rs7161592	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7161628	1.00[CEU][hapmap]
rs73253213	1.00[EUR][1000 genomes]
rs73253245	1.00[ASN][1000 genomes]
rs73255199	1.00[EUR][1000 genomes]
rs74043606	1.00[EUR][1000 genomes]
rs8003033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004616	1.00[CEU][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs8005763	1.00[CEU][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs8005857	0.82[EUR][1000 genomes]
rs8009012	1.00[CEU][hapmap]
rs8010697	1.00[EUR][1000 genomes]
rs8015179	1.00[EUR][1000 genomes]
rs8015245	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015640	1.00[EUR][1000 genomes]
rs8018137	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8018529	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8020874	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs8021182	1.00[CEU][hapmap];0.84[LWK][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs970489	1.00[CEU][hapmap];0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32031400-32069400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:32031400-32069600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr14:32031600-32061200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr14:32031600-32069200	Weak transcription	Fetal Intestine Small	intestine
5	chr14:32031800-32068200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:32031800-32069400	Weak transcription	A549	lung
7	chr14:32037400-32069400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr14:32037400-32071200	Weak transcription	HSMM	muscle
9	chr14:32037600-32069400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:32042800-32068800	Weak transcription	Primary B cells from cord blood	blood
11	chr14:32042800-32075600	Weak transcription	Primary T cells from cord blood	blood
12	chr14:32046200-32110600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:32046400-32062800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr14:32046400-32073400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:32046600-32069400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:32047200-32069400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:32048400-32069400	Weak transcription	Left Ventricle	heart
18	chr14:32050000-32075600	Weak transcription	Brain Germinal Matrix	brain
19	chr14:32050200-32061200	Weak transcription	HepG2	liver
20	chr14:32051600-32065400	Weak transcription	Fetal Stomach	stomach
21	chr14:32052600-32059000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:32052800-32089800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links