Variant report

Variant	rs6571451
Chromosome Location	chr14:32172471-32172472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10137974	0.84[AFR][1000 genomes]
rs10148038	0.83[AFR][1000 genomes]
rs10149668	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10150831	0.83[AFR][1000 genomes]
rs10162318	1.00[ASN][1000 genomes]
rs10162486	1.00[ASN][1000 genomes]
rs11156681	1.00[ASN][1000 genomes]
rs11846852	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11848462	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13379320	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17098019	1.00[ASN][1000 genomes]
rs17098168	0.82[AFR][1000 genomes]
rs1982013	0.82[AFR][1000 genomes]
rs1982014	0.82[AFR][1000 genomes]
rs2120135	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2120137	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2120138	0.82[AMR][1000 genomes]
rs2378900	0.82[AMR][1000 genomes]
rs2378934	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28446445	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28532719	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs28637268	0.86[AFR][1000 genomes]
rs28862034	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28864375	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4981882	1.00[ASN][1000 genomes]
rs55674235	0.88[AMR][1000 genomes]
rs58280106	0.84[AMR][1000 genomes]
rs58900150	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs59002501	0.83[AFR][1000 genomes]
rs59679301	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6571449	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6571455	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6571456	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6571460	0.84[AMR][1000 genomes]
rs7140277	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7145785	0.91[AMR][1000 genomes]
rs7151198	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7153885	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7158443	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7158693	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7159319	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73253213	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73253245	1.00[ASN][1000 genomes]
rs73255199	0.84[AFR][1000 genomes]
rs74043606	0.82[AMR][1000 genomes]
rs8003033	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8004616	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs8005763	0.84[AFR][1000 genomes]
rs8005857	0.85[AMR][1000 genomes]
rs8010697	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8015179	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs8015245	0.83[AFR][1000 genomes]
rs8015640	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs8018137	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901591	chr14:32093548-32202677	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32141400-32175800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:32148000-32183600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr14:32152400-32173000	Weak transcription	Ovary	ovary
4	chr14:32155400-32173000	Weak transcription	Aorta	Aorta
5	chr14:32159000-32184800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr14:32162000-32175000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:32162000-32186800	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:32165000-32179600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:32165600-32188200	Weak transcription	Right Ventricle	heart
10	chr14:32165800-32175000	Weak transcription	Gastric	stomach
11	chr14:32166400-32177800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:32166600-32176200	Weak transcription	Liver	Liver
13	chr14:32167200-32177000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr14:32167800-32174400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:32168800-32174400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:32168800-32176800	Weak transcription	Left Ventricle	heart
17	chr14:32169600-32177200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:32169600-32181800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:32169800-32173800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr14:32170400-32172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr14:32170400-32175400	Weak transcription	Fetal Lung	lung
22	chr14:32170800-32173600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr14:32171000-32186400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:32171000-32200600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr14:32171200-32172600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:32171200-32172800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
27	chr14:32171400-32175200	Strong transcription	Primary T cells from cord blood	blood
28	chr14:32171600-32172600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr14:32171600-32173400	Strong transcription	Primary B cells from cord blood	blood
30	chr14:32171600-32173400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:32171600-32174000	Weak transcription	HepG2	liver
32	chr14:32171600-32174800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:32171600-32176400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr14:32171800-32173800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr14:32171800-32175000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr14:32171800-32176000	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr14:32171800-32176800	Weak transcription	A549	lung
38	chr14:32171800-32182200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr14:32172000-32174600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr14:32172000-32186400	Weak transcription	Pancreas	Pancrea
41	chr14:32172000-32188200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr14:32172200-32172600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr14:32172200-32173800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr14:32172200-32174800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr14:32172200-32180000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr14:32172400-32172600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr14:32172400-32172600	ZNF genes & repeats	Fetal Brain Female	brain
48	chr14:32172400-32172600	ZNF genes & repeats	Fetal Muscle Leg	muscle
49	chr14:32172400-32172800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:32172400-32173000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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