Variant report

Variant	rs7158693
Chromosome Location	chr14:32108630-32108631
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10148038	0.82[AFR][1000 genomes]
rs10149668	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10150831	0.82[AFR][1000 genomes]
rs11846852	0.93[AMR][1000 genomes]
rs11848462	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12894985	0.87[AMR][1000 genomes]
rs13379320	0.93[AMR][1000 genomes]
rs17098019	0.86[AMR][1000 genomes]
rs17098168	0.80[AFR][1000 genomes]
rs1982013	0.80[AFR][1000 genomes]
rs1982014	0.80[AFR][1000 genomes]
rs2120135	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2120137	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2120138	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2378899	0.87[AMR][1000 genomes]
rs2378900	0.88[AMR][1000 genomes]
rs2378934	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28446445	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28532719	0.93[AMR][1000 genomes]
rs28580449	0.90[AMR][1000 genomes]
rs28637268	0.82[AFR][1000 genomes]
rs28862034	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28864375	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55674235	0.93[AMR][1000 genomes]
rs58213271	0.96[AMR][1000 genomes]
rs58280106	0.90[AMR][1000 genomes]
rs58900150	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs59002501	0.82[AFR][1000 genomes]
rs59679301	0.81[AMR][1000 genomes]
rs6571449	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6571451	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6571455	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6571456	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6571460	0.90[AMR][1000 genomes]
rs7140277	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7145785	0.84[AMR][1000 genomes]
rs7150851	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7151198	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7153885	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7158443	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7159319	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7161592	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73253213	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73255199	0.81[AFR][1000 genomes]
rs74043606	0.87[AMR][1000 genomes]
rs8003033	0.84[AMR][1000 genomes]
rs8005763	0.81[AFR][1000 genomes]
rs8010697	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs8015179	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs8015245	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs8018137	0.93[AMR][1000 genomes]
rs8018529	0.82[AFR][1000 genomes]
rs970489	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	esv3363142	chr14:32083250-32120361	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv901591	chr14:32093548-32202677	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32046200-32110600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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