Variant report
Variant | rs7158693 |
---|---|
Chromosome Location | chr14:32108630-32108631 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10148038 | 0.82[AFR][1000 genomes] |
rs10149668 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes] |
rs10150831 | 0.82[AFR][1000 genomes] |
rs11846852 | 0.93[AMR][1000 genomes] |
rs11848462 | 0.80[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs12894985 | 0.87[AMR][1000 genomes] |
rs13379320 | 0.93[AMR][1000 genomes] |
rs17098019 | 0.86[AMR][1000 genomes] |
rs17098168 | 0.80[AFR][1000 genomes] |
rs1982013 | 0.80[AFR][1000 genomes] |
rs1982014 | 0.80[AFR][1000 genomes] |
rs2120135 | 0.86[AFR][1000 genomes];0.84[AMR][1000 genomes] |
rs2120137 | 0.84[AFR][1000 genomes];0.84[AMR][1000 genomes] |
rs2120138 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs2378899 | 0.87[AMR][1000 genomes] |
rs2378900 | 0.88[AMR][1000 genomes] |
rs2378934 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes] |
rs28446445 | 0.84[AFR][1000 genomes];0.84[AMR][1000 genomes] |
rs28532719 | 0.93[AMR][1000 genomes] |
rs28580449 | 0.90[AMR][1000 genomes] |
rs28637268 | 0.82[AFR][1000 genomes] |
rs28862034 | 0.86[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs28864375 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs55674235 | 0.93[AMR][1000 genomes] |
rs58213271 | 0.96[AMR][1000 genomes] |
rs58280106 | 0.90[AMR][1000 genomes] |
rs58900150 | 0.86[AFR][1000 genomes];0.84[AMR][1000 genomes] |
rs59002501 | 0.82[AFR][1000 genomes] |
rs59679301 | 0.81[AMR][1000 genomes] |
rs6571449 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes] |
rs6571451 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs6571455 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes] |
rs6571456 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes] |
rs6571460 | 0.90[AMR][1000 genomes] |
rs7140277 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes] |
rs7145785 | 0.84[AMR][1000 genomes] |
rs7150851 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes] |
rs7151198 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes] |
rs7153885 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes] |
rs7158443 | 0.82[AFR][1000 genomes];0.84[AMR][1000 genomes] |
rs7159319 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs7161592 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes] |
rs73253213 | 0.87[AFR][1000 genomes];0.84[AMR][1000 genomes] |
rs73255199 | 0.81[AFR][1000 genomes] |
rs74043606 | 0.87[AMR][1000 genomes] |
rs8003033 | 0.84[AMR][1000 genomes] |
rs8005763 | 0.81[AFR][1000 genomes] |
rs8010697 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes] |
rs8015179 | 0.87[AFR][1000 genomes];0.84[AMR][1000 genomes] |
rs8015245 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes] |
rs8018137 | 0.93[AMR][1000 genomes] |
rs8018529 | 0.82[AFR][1000 genomes] |
rs970489 | 0.83[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv931935 | chr14:31871658-32117666 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
2 | nsv934110 | chr14:31887749-32109529 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
3 | nsv934206 | chr14:31887749-32257097 | ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
4 | nsv564180 | chr14:31958566-32368934 | Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
5 | nsv564181 | chr14:31958761-32363980 | Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
6 | esv3363142 | chr14:32083250-32120361 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
7 | nsv901591 | chr14:32093548-32202677 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
8 | nsv901592 | chr14:32093548-32267323 | Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:32046200-32110600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |