Variant report

Variant	rs8018529
Chromosome Location	chr14:32037224-32037225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32030832..32032361-chr14:32036434..32038297,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10137974	0.86[EUR][1000 genomes]
rs10142679	0.86[EUR][1000 genomes]
rs10149668	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11846852	0.86[EUR][1000 genomes]
rs11847014	0.86[EUR][1000 genomes]
rs11847815	0.86[EUR][1000 genomes]
rs11848462	0.86[EUR][1000 genomes]
rs12894985	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13379320	0.86[EUR][1000 genomes]
rs17098019	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2034070	1.00[EUR][1000 genomes]
rs2120135	0.86[EUR][1000 genomes]
rs2378899	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2378900	0.86[EUR][1000 genomes]
rs2378934	0.86[EUR][1000 genomes]
rs28446445	0.86[EUR][1000 genomes]
rs28532719	0.86[EUR][1000 genomes]
rs28580449	0.83[AMR][1000 genomes]
rs28862034	0.86[EUR][1000 genomes]
rs55674235	0.80[EUR][1000 genomes]
rs58900150	0.86[EUR][1000 genomes]
rs59679301	0.86[EUR][1000 genomes]
rs6571449	0.86[EUR][1000 genomes]
rs6571455	0.86[EUR][1000 genomes]
rs6571456	0.86[EUR][1000 genomes]
rs7140277	0.86[EUR][1000 genomes]
rs7145785	0.86[EUR][1000 genomes]
rs7150042	0.86[EUR][1000 genomes]
rs7150851	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7151198	0.86[EUR][1000 genomes]
rs7153885	0.86[EUR][1000 genomes]
rs7154277	0.86[EUR][1000 genomes]
rs7158443	0.86[EUR][1000 genomes]
rs7158693	0.82[AFR][1000 genomes]
rs7161592	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73253213	0.86[EUR][1000 genomes]
rs74043606	0.86[EUR][1000 genomes]
rs8003033	0.86[EUR][1000 genomes]
rs8004616	0.93[EUR][1000 genomes]
rs8005763	0.86[EUR][1000 genomes]
rs8010697	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs8015179	0.86[EUR][1000 genomes]
rs8015245	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8015640	0.86[EUR][1000 genomes]
rs8018137	0.86[EUR][1000 genomes]
rs8021182	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32031000-32040000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:32031000-32047000	Weak transcription	Left Ventricle	heart
3	chr14:32031000-32048000	Weak transcription	Esophagus	oesophagus
4	chr14:32031000-32054400	Weak transcription	Pancreas	Pancrea
5	chr14:32031400-32039800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr14:32031400-32040000	Weak transcription	Psoas Muscle	Psoas
7	chr14:32031400-32040000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:32031400-32045600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:32031400-32046600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:32031400-32046600	Weak transcription	Aorta	Aorta
11	chr14:32031400-32046800	Weak transcription	Ovary	ovary
12	chr14:32031400-32050000	Weak transcription	Fetal Brain Female	brain
13	chr14:32031400-32052800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr14:32031400-32069400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr14:32031400-32069600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr14:32031600-32038400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:32031600-32038800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr14:32031600-32039800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr14:32031600-32039800	Weak transcription	Brain Substantia Nigra	brain
20	chr14:32031600-32040000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:32031600-32045400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:32031600-32045400	Weak transcription	Fetal Intestine Large	intestine
23	chr14:32031600-32045600	Weak transcription	Fetal Muscle Leg	muscle
24	chr14:32031600-32046400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr14:32031600-32049600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr14:32031600-32061200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr14:32031600-32069200	Weak transcription	Fetal Intestine Small	intestine
28	chr14:32031800-32038000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr14:32031800-32038800	Weak transcription	Primary T cells from cord blood	blood
30	chr14:32031800-32039600	Weak transcription	Fetal Heart	heart
31	chr14:32031800-32039800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr14:32031800-32039800	Weak transcription	Colon Smooth Muscle	Colon
33	chr14:32031800-32039800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr14:32031800-32041200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:32031800-32047000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr14:32031800-32048000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr14:32031800-32050400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr14:32031800-32051200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:32031800-32051600	Weak transcription	Liver	Liver
40	chr14:32031800-32068200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr14:32031800-32069400	Weak transcription	A549	lung
42	chr14:32032600-32037400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr14:32032800-32040000	Weak transcription	Brain Angular Gyrus	brain
44	chr14:32033000-32041800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr14:32033200-32038400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr14:32033600-32047600	Weak transcription	Fetal Brain Male	brain
47	chr14:32033800-32037400	Strong transcription	HepG2	liver
48	chr14:32034800-32042200	Weak transcription	GM12878-XiMat	blood
49	chr14:32035200-32042000	Weak transcription	Primary B cells from cord blood	blood
50	chr14:32036000-32037600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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