Variant report

Variant	rs12894985
Chromosome Location	chr14:32092670-32092671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10047861	1.00[EUR][1000 genomes]
rs10137974	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142679	1.00[EUR][1000 genomes]
rs10143144	0.93[EUR][1000 genomes]
rs10148038	1.00[EUR][1000 genomes]
rs10149668	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10150831	1.00[EUR][1000 genomes]
rs10151156	1.00[EUR][1000 genomes]
rs11846852	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11847014	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11847815	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11848462	1.00[EUR][1000 genomes]
rs13379320	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1430424	1.00[EUR][1000 genomes]
rs17098019	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17098168	1.00[EUR][1000 genomes]
rs17098171	0.93[EUR][1000 genomes]
rs1982013	1.00[EUR][1000 genomes]
rs1982014	1.00[EUR][1000 genomes]
rs2034070	0.86[EUR][1000 genomes]
rs2120135	1.00[EUR][1000 genomes]
rs2120137	0.87[EUR][1000 genomes]
rs2120138	0.93[EUR][1000 genomes]
rs2378899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2378900	1.00[EUR][1000 genomes]
rs2378934	1.00[EUR][1000 genomes]
rs28446445	1.00[EUR][1000 genomes]
rs28532719	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28580449	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28806946	1.00[EUR][1000 genomes]
rs28862034	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28864375	0.93[EUR][1000 genomes]
rs55674235	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58097888	1.00[EUR][1000 genomes]
rs58213271	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58280106	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58900150	1.00[EUR][1000 genomes]
rs59002501	1.00[EUR][1000 genomes]
rs59679301	1.00[EUR][1000 genomes]
rs60654485	0.93[EUR][1000 genomes]
rs6571449	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571455	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571456	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571460	0.87[EUR][1000 genomes]
rs6571465	1.00[EUR][1000 genomes]
rs6571466	1.00[EUR][1000 genomes]
rs6571467	1.00[EUR][1000 genomes]
rs7140277	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141267	1.00[EUR][1000 genomes]
rs7141477	1.00[EUR][1000 genomes]
rs7141722	1.00[EUR][1000 genomes]
rs7145785	1.00[EUR][1000 genomes]
rs7150042	1.00[EUR][1000 genomes]
rs7150488	1.00[EUR][1000 genomes]
rs7150851	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151198	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7153885	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7154277	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7156907	1.00[EUR][1000 genomes]
rs7158443	1.00[EUR][1000 genomes]
rs7158693	0.87[AMR][1000 genomes]
rs7159193	1.00[EUR][1000 genomes]
rs7159319	0.93[EUR][1000 genomes]
rs7161592	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7161628	1.00[EUR][1000 genomes]
rs73253213	1.00[EUR][1000 genomes]
rs73255199	1.00[EUR][1000 genomes]
rs74043606	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8003033	1.00[EUR][1000 genomes]
rs8004616	0.93[EUR][1000 genomes]
rs8005763	1.00[EUR][1000 genomes]
rs8005857	0.82[EUR][1000 genomes]
rs8009012	1.00[EUR][1000 genomes]
rs8010697	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8013895	1.00[ASN][1000 genomes]
rs8015179	1.00[EUR][1000 genomes]
rs8015245	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015640	1.00[EUR][1000 genomes]
rs8018137	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018529	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8020874	1.00[EUR][1000 genomes]
rs8021182	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs970489	1.00[EUR][1000 genomes]
rs9743593	1.00[EUR][1000 genomes]
rs9743878	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	esv3363142	chr14:32083250-32120361	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32046200-32110600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:32069600-32102800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:32088000-32093600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:32089400-32093400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:32089800-32093000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr14:32090000-32092800	ZNF genes & repeats	Lung	lung
7	chr14:32090400-32093200	ZNF genes & repeats	HepG2	liver
8	chr14:32091400-32093200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
9	chr14:32091600-32092800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:32091600-32092800	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr14:32092000-32092800	Strong transcription	Fetal Intestine Large	intestine
12	chr14:32092000-32093400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr14:32092000-32096000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr14:32092000-32096400	Weak transcription	Fetal Lung	lung
15	chr14:32092200-32093800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:32092200-32099000	Weak transcription	Aorta	Aorta
17	chr14:32092200-32099600	Weak transcription	Brain Hippocampus Middle	brain
18	chr14:32092200-32100400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr14:32092400-32094800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:32092400-32100600	Weak transcription	Left Ventricle	heart
21	chr14:32092400-32103000	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links