Variant report

Variant	rs28806946
Chromosome Location	chr14:32274390-32274391
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10047861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10132862	1.00[EUR][1000 genomes]
rs10137974	1.00[EUR][1000 genomes]
rs10139914	0.85[EUR][1000 genomes]
rs10142679	1.00[EUR][1000 genomes]
rs10143144	0.93[EUR][1000 genomes]
rs10148038	1.00[EUR][1000 genomes]
rs10149668	1.00[EUR][1000 genomes]
rs10150831	1.00[EUR][1000 genomes]
rs10151156	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11846852	1.00[EUR][1000 genomes]
rs11847014	1.00[EUR][1000 genomes]
rs11847815	1.00[EUR][1000 genomes]
rs11848462	1.00[EUR][1000 genomes]
rs11850880	1.00[EUR][1000 genomes]
rs12894985	1.00[EUR][1000 genomes]
rs13379320	1.00[EUR][1000 genomes]
rs1430424	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17098168	1.00[EUR][1000 genomes]
rs17098171	0.93[EUR][1000 genomes]
rs1982013	1.00[EUR][1000 genomes]
rs1982014	1.00[EUR][1000 genomes]
rs2115957	1.00[EUR][1000 genomes]
rs2120135	1.00[EUR][1000 genomes]
rs2120137	0.87[EUR][1000 genomes]
rs2120138	0.93[EUR][1000 genomes]
rs2163302	1.00[EUR][1000 genomes]
rs2378899	1.00[EUR][1000 genomes]
rs2378900	1.00[EUR][1000 genomes]
rs2378934	1.00[EUR][1000 genomes]
rs28446445	1.00[EUR][1000 genomes]
rs28532719	1.00[EUR][1000 genomes]
rs28580449	0.93[EUR][1000 genomes]
rs28862034	1.00[EUR][1000 genomes]
rs28864375	0.93[EUR][1000 genomes]
rs55674235	0.93[EUR][1000 genomes]
rs58097888	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58213271	0.93[EUR][1000 genomes]
rs58280106	0.93[EUR][1000 genomes]
rs58900150	1.00[EUR][1000 genomes]
rs59002501	1.00[EUR][1000 genomes]
rs59679301	1.00[EUR][1000 genomes]
rs60654485	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6571449	1.00[EUR][1000 genomes]
rs6571455	1.00[EUR][1000 genomes]
rs6571456	1.00[EUR][1000 genomes]
rs6571460	0.87[EUR][1000 genomes]
rs6571465	1.00[EUR][1000 genomes]
rs6571466	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571467	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7140277	1.00[EUR][1000 genomes]
rs7141267	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141477	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141722	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7143532	1.00[EUR][1000 genomes]
rs7144178	1.00[EUR][1000 genomes]
rs7145785	1.00[EUR][1000 genomes]
rs7147779	1.00[EUR][1000 genomes]
rs7148248	1.00[EUR][1000 genomes]
rs7150042	1.00[EUR][1000 genomes]
rs7150488	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7150851	1.00[EUR][1000 genomes]
rs7151198	1.00[EUR][1000 genomes]
rs7153885	1.00[EUR][1000 genomes]
rs7154277	1.00[EUR][1000 genomes]
rs7156676	1.00[EUR][1000 genomes]
rs7156907	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7158443	1.00[EUR][1000 genomes]
rs7158652	1.00[EUR][1000 genomes]
rs7159193	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7159319	0.93[EUR][1000 genomes]
rs7161592	0.93[EUR][1000 genomes]
rs7161628	1.00[EUR][1000 genomes]
rs73253213	1.00[EUR][1000 genomes]
rs73255199	1.00[EUR][1000 genomes]
rs74043606	1.00[EUR][1000 genomes]
rs8003033	1.00[EUR][1000 genomes]
rs8004616	0.93[EUR][1000 genomes]
rs8005763	1.00[EUR][1000 genomes]
rs8005857	0.82[EUR][1000 genomes]
rs8009012	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010697	1.00[EUR][1000 genomes]
rs8015179	1.00[EUR][1000 genomes]
rs8015640	1.00[EUR][1000 genomes]
rs8018137	1.00[EUR][1000 genomes]
rs8020874	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8021182	1.00[EUR][1000 genomes]
rs8022324	1.00[EUR][1000 genomes]
rs970489	1.00[EUR][1000 genomes]
rs9743593	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9743878	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv85392	chr14:32269881-32275120	Enhancers Strong transcription Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32250600-32322400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:32257600-32281200	Weak transcription	HepG2	liver
3	chr14:32263000-32287400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:32266800-32281000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr14:32270600-32281000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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